Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   V6U64_RS05480 Genome accession   NZ_CP145862
Coordinates   1222822..1223631 (-) Length   269 a.a.
NCBI ID   WP_126405093.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1217822..1228631
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS05455 (V6U64_05450) - 1218814..1219200 (-) 387 WP_048790817.1 DUF1934 domain-containing protein -
  V6U64_RS05460 (V6U64_05455) - 1219283..1220149 (-) 867 WP_288587243.1 GNAT family N-acetyltransferase -
  V6U64_RS05465 (V6U64_05460) yidA 1220327..1221136 (+) 810 WP_002890845.1 sugar-phosphatase -
  V6U64_RS05470 (V6U64_05465) - 1221138..1222352 (+) 1215 WP_073687783.1 aminoacyltransferase -
  V6U64_RS05475 (V6U64_05470) - 1222404..1222763 (-) 360 WP_037611660.1 YbaN family protein -
  V6U64_RS05480 (V6U64_05475) vicX 1222822..1223631 (-) 810 WP_126405093.1 MBL fold metallo-hydrolase Regulator
  V6U64_RS05485 (V6U64_05480) vicK 1223637..1224980 (-) 1344 WP_410536163.1 cell wall metabolism sensor histidine kinase VicK Regulator
  V6U64_RS05490 (V6U64_05485) vicR 1224973..1225680 (-) 708 WP_002884978.1 response regulator YycF Regulator
  V6U64_RS05495 (V6U64_05490) - 1225965..1226732 (+) 768 WP_002885036.1 amino acid ABC transporter ATP-binding protein -
  V6U64_RS05500 (V6U64_05495) - 1226742..1227575 (+) 834 WP_410539637.1 transporter substrate-binding domain-containing protein -
  V6U64_RS05505 (V6U64_05500) - 1227593..1228291 (+) 699 WP_002886251.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30007.86 Da        Isoelectric Point: 5.3499

>NTDB_id=940448 V6U64_RS05480 WP_126405093.1 1222822..1223631(-) (vicX) [Streptococcus salivarius strain KSS4]
MSDLGFKYSILASGSTGNSFYLETPEKKILVDAGLSGKKITSLLAEIDRDPSDLDAILVTHEHKDHIHGVGVLARKYGMD
IYANEKTWQIMDSKNMLGKIDNSQKHVFSRDKLLTFGDLDIESFGVSHDAIDPQFYRFMKDGKSFVMLTDTGYVSDRMAG
IIENADGYLIESNHDVEILRAGSYPWSTKQRILSDQGHLCNEDGADAMIRTIGNKTKKIYLGHLSKENNIKELAHMTMEN
QLARADFGVGTDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=940448 V6U64_RS05480 WP_126405093.1 1222822..1223631(-) (vicX) [Streptococcus salivarius strain KSS4]
ATCTCAGATTTAGGGTTTAAATATAGTATTTTGGCTTCAGGGTCAACTGGTAATTCCTTTTACTTGGAAACTCCAGAGAA
GAAGATTCTTGTAGATGCTGGTTTGTCTGGTAAGAAAATCACAAGTTTGCTAGCTGAGATTGATCGTGACCCGAGTGATT
TGGATGCAATCTTAGTAACGCATGAACACAAGGATCACATCCATGGCGTAGGCGTTTTAGCTCGTAAATATGGCATGGAT
ATCTACGCCAACGAGAAAACCTGGCAGATTATGGATAGTAAAAATATGCTTGGCAAGATTGATAATAGCCAGAAACATGT
TTTTTCTCGTGACAAGCTTCTGACCTTTGGAGACCTTGATATTGAGTCTTTTGGAGTTAGTCACGATGCTATTGATCCAC
AGTTCTATCGCTTTATGAAAGATGGAAAGAGTTTTGTCATGTTAACGGATACGGGTTATGTTTCTGATCGTATGGCAGGT
ATTATTGAGAATGCCGACGGCTATCTGATTGAGTCCAATCATGATGTTGAAATCCTTAGAGCAGGTTCATATCCTTGGTC
AACCAAGCAACGTATCCTCTCTGATCAAGGTCACTTGTGTAATGAAGATGGAGCGGATGCTATGATTCGTACCATCGGTA
ATAAAACTAAAAAGATCTACTTGGGTCACCTTTCCAAAGAAAATAATATCAAGGAGTTGGCCCACATGACGATGGAAAAT
CAGTTGGCACGTGCTGACTTTGGTGTTGGAACTGACTTTAAAGTTTATGATACCTCACCAGACACAGCGACTCCACTGAC
AGACATTTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.952

100

0.77