Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V6U64_RS02115 Genome accession   NZ_CP145862
Coordinates   400165..401202 (+) Length   345 a.a.
NCBI ID   WP_410536865.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 395165..406202
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS02095 (V6U64_02095) - 395904..398009 (+) 2106 WP_049529235.1 AAA family ATPase -
  V6U64_RS02100 (V6U64_02100) - 398657..398956 (-) 300 WP_002891662.1 hypothetical protein -
  V6U64_RS02105 (V6U64_02105) - 398953..399372 (-) 420 WP_002891660.1 HIT family protein -
  V6U64_RS02110 (V6U64_02110) pptA 399437..400168 (+) 732 WP_037602681.1 ABC transporter ATP-binding protein Regulator
  V6U64_RS02115 (V6U64_02115) pptB 400165..401202 (+) 1038 WP_410536865.1 ABC transporter permease Regulator
  V6U64_RS02120 (V6U64_02120) ccrZ 401260..402051 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6U64_RS02125 (V6U64_02125) trmB 402061..402702 (+) 642 WP_003096317.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6U64_RS02135 (V6U64_02135) - 402919..404100 (-) 1182 WP_110981265.1 NAD(P)/FAD-dependent oxidoreductase -
  V6U64_RS02140 (V6U64_02140) ilvD 404213..405931 (+) 1719 WP_142236628.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 40037.59 Da        Isoelectric Point: 10.5539

>NTDB_id=940432 V6U64_RS02115 WP_410536865.1 400165..401202(+) (pptB) [Streptococcus salivarius strain KSS4]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLMLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLDHVKKATGRAFRFWVIVQTLIFILVIPLFLALRLPVWGVILVAVAMAILKYVIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDGVLKRTKKDKENTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKCLITQIVLGMTLVQAICLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=940432 V6U64_RS02115 WP_410536865.1 400165..401202(+) (pptB) [Streptococcus salivarius strain KSS4]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTGTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTTCGACATTTTCCAAAGA
ATCCGTGGGCAATTATTCTTGGCTTGCTTATGCTTTGTCTGTTATTACCTTTCTGGGGGAATATTGCGACTTATCTAGAA
CCTGCGGACAAGCACTACCTTTTGGTTAAGGAAGAAGAGGTGCTAGACCATGTTAAGAAGGCAACAGGACGTGCTTTTAG
ATTTTGGGTAATAGTACAAACCCTGATTTTTATTTTGGTTATTCCTCTCTTTTTAGCCTTGAGACTTCCAGTTTGGGGAG
TTATCCTTGTAGCTGTGGCTATGGCTATTCTTAAGTATGTTATTTTCCAGAAAAAGGCTCAACCTTTTTATAAGCAGTCT
GGACTGAATTGGACTGAAGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATCTTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAAGGGATTACGTCGAGTGTTAAACGTCGTGCCTATTTGGATGGTGTTCTCAAACGTACAAAGAAAGACAAGGAAA
ATACCTGGTATAATCTTTACCTAAGAGCCTTCTTGCGTTCTGGAGATTACTTTGCCCTTAGCCTACGCCTGTTTGCCCTA
ACGCTTTTAGTTATCTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTGCTTGTGGTTGTTTTTGACTACCTCTTGCTCTT
CCAGCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCAGTTGGAAAAGACATGCAGGTGA
GCAATCTTAAGTGCTTGATTACCCAGATTGTACTTGGGATGACTCTGGTACAGGCTATTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTAGTTCTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)

Bacterial ABC transporter protein EcsB (EcsB)

(4-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

96.221

99.71

0.959
  pptB Streptococcus thermophilus LMD-9

91.57

99.71

0.913