Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   ABUS03_RS17935 Genome accession   NZ_CP169782
Coordinates   3677981..3678622 (-) Length   213 a.a.
NCBI ID   WP_031961396.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Hv640     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3672981..3683622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABUS03_RS17915 aroK 3673897..3674466 (-) 570 WP_000643712.1 shikimate kinase AroK -
  ABUS03_RS17920 pilQ 3674478..3676643 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  ABUS03_RS17925 pilP 3676706..3677233 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  ABUS03_RS17930 pilO 3677244..3677984 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  ABUS03_RS17935 pilN 3677981..3678622 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  ABUS03_RS17940 pilM 3678622..3679680 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  ABUS03_RS17945 ponA 3679842..3682397 (+) 2556 WP_031965088.1 penicillin-binding protein PBP1a -
  ABUS03_RS17950 - 3682415..3683239 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  ABUS03_RS17955 - 3683242..3683574 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23931.29 Da        Isoelectric Point: 5.8563

>NTDB_id=940431 ABUS03_RS17935 WP_031961396.1 3677981..3678622(-) (pilN) [Acinetobacter baumannii strain Hv640]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKTSTGGSVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=940431 ABUS03_RS17935 WP_031961396.1 3677981..3678622(-) (pilN) [Acinetobacter baumannii strain Hv640]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGACATCTACAGGTGGAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.122

100

0.981
  comN/pilN Acinetobacter baylyi ADP1

71.77

98.122

0.704