Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   V6U63_RS09065 Genome accession   NZ_CP145861
Coordinates   1966093..1968063 (-) Length   656 a.a.
NCBI ID   WP_048790871.1    Uniprot ID   A0AB35IUN6
Organism   Streptococcus salivarius strain KSS3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1961093..1973063
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS09050 (V6U63_09035) - 1961692..1962582 (-) 891 WP_022496040.1 hypothetical protein -
  V6U63_RS09055 (V6U63_09040) - 1962642..1963949 (-) 1308 WP_073687793.1 GHKL domain-containing protein -
  V6U63_RS09060 (V6U63_09045) gltX 1964402..1965856 (-) 1455 WP_037611119.1 glutamate--tRNA ligase -
  V6U63_RS09065 (V6U63_09050) amiA 1966093..1968063 (-) 1971 WP_048790871.1 peptide ABC transporter substrate-binding protein Regulator
  V6U63_RS09070 (V6U63_09055) rplA 1968243..1968932 (-) 690 WP_002885800.1 50S ribosomal protein L1 -
  V6U63_RS09075 (V6U63_09060) rplK 1969032..1969457 (-) 426 WP_002885648.1 50S ribosomal protein L11 -
  V6U63_RS09080 (V6U63_09065) - 1969629..1969982 (+) 354 WP_038676827.1 DUF3397 domain-containing protein -
  V6U63_RS09085 (V6U63_09070) - 1970078..1970575 (-) 498 WP_038676829.1 beta-class carbonic anhydrase -
  V6U63_RS09090 (V6U63_09075) - 1970726..1971421 (-) 696 WP_002885783.1 TIGR00266 family protein -
  V6U63_RS09095 (V6U63_09080) radA 1971507..1972868 (-) 1362 WP_072903619.1 DNA repair protein RadA Machinery gene

Sequence

Protein


Download         Length: 656 a.a.        Molecular weight: 73095.85 Da        Isoelectric Point: 4.8628

>NTDB_id=940399 V6U63_RS09065 WP_048790871.1 1966093..1968063(-) (amiA) [Streptococcus salivarius strain KSS3]
MKKSKVFLLATVGLLSVGVLTACSSSSKTSGKTYNYVYGGDPATLDYVSTNKKNMTTAVSNGVDGLFENDQYGNLKPSVA
ENWSVSQDGLTYTYKIRKGVKWYTSDGEEYANVTAKDFVTGLKHAADTNSEAIYLLQNSVKGLNDYLSGANKDFSNVGIK
AVDDYTLQYTLSQPEPYWNSKLTYSVTWPVNEDFLKSKGKDFGKSTDPTSILYNGPYLLKSLTTKSSIEFTKNENYWDKD
NVYFDTVKLTYDDGTDQESLERNFTDGVYNLARLYPTSSNYSKVEKQYKDNIFYTQPGAAVEGVGINIDRQTYDHTSKEN
DQQKTSTKTALLNKDFRQALGFAIDRTNYAAQLNGKEGGSTAVRNIYVKPDFVQADGKDFGTMVMDQLPAYGDEWSGVNL
ADSQDGLYNPEKAKAEFAKAKEALQAEGVQFPIHLDVPVNQSNKIFVNQVQSLKQSIESALGKDNVVLDLHQLSTDDFYN
ITYSASNAAAEDWDLSVGVAWEPDYLDPSTYLDVLKTTNSENTKSFMGYDDPNSQAVEKVGLKEYDQLVDDASKETTDLT
ARYEKYAKAQAWLTDSALYIPTTTYNGAAAVVSRIKPFSGAYAQAGDKGSTYYFKYLKSQDDIVTKKQYDSAYKDWLKER
AKSNDKAQKDLAKHVK

Nucleotide


Download         Length: 1971 bp        

>NTDB_id=940399 V6U63_RS09065 WP_048790871.1 1966093..1968063(-) (amiA) [Streptococcus salivarius strain KSS3]
ATGAAAAAGAGTAAGGTATTTTTACTAGCAACCGTAGGCCTGTTATCTGTAGGTGTTTTAACGGCTTGCTCGTCATCAAG
TAAGACGTCTGGTAAGACTTATAATTATGTTTACGGTGGCGATCCTGCAACCCTAGACTATGTTTCTACAAATAAGAAAA
ACATGACGACAGCCGTTAGTAACGGTGTTGATGGTTTGTTTGAAAATGACCAATATGGGAATCTAAAACCTTCTGTCGCT
GAAAACTGGTCTGTTTCTCAAGATGGTTTGACATATACTTACAAGATTCGTAAGGGTGTCAAATGGTACACTTCAGACGG
TGAAGAATATGCCAATGTAACAGCTAAAGACTTTGTAACAGGTCTTAAGCATGCTGCTGATACTAATTCTGAAGCGATTT
ATTTGCTACAAAACTCAGTTAAGGGCTTGAATGATTACCTTTCAGGTGCCAACAAGGACTTCTCAAATGTTGGTATCAAA
GCAGTTGATGATTACACTTTGCAATATACGCTTAGCCAACCAGAACCTTACTGGAATTCAAAATTGACCTACTCTGTTAC
TTGGCCTGTTAATGAAGATTTCTTGAAATCTAAAGGTAAAGACTTTGGTAAGTCAACAGACCCAACATCTATTCTTTATA
ACGGTCCATATCTTCTTAAATCTTTGACAACGAAATCTTCTATTGAGTTCACCAAGAATGAAAACTACTGGGATAAGGAT
AATGTCTATTTTGATACAGTTAAATTGACTTACGATGATGGTACAGACCAAGAATCCTTGGAACGTAACTTCACTGATGG
AGTCTATAACTTAGCTCGTCTATACCCAACTAGCTCAAACTATTCTAAAGTTGAAAAACAGTACAAAGACAATATTTTCT
ATACACAACCTGGAGCAGCTGTAGAAGGTGTCGGTATTAATATCGATCGTCAAACTTATGACCATACATCTAAAGAAAAT
GATCAACAAAAGACATCAACTAAGACAGCTCTTCTTAACAAAGATTTCCGTCAAGCATTAGGTTTTGCCATTGACCGTAC
AAATTACGCCGCACAACTTAACGGTAAAGAGGGTGGTAGTACTGCCGTTCGTAATATCTATGTTAAACCAGACTTTGTTC
AAGCAGATGGTAAGGATTTCGGAACAATGGTAATGGATCAACTTCCAGCTTATGGTGATGAGTGGTCTGGTGTGAATCTT
GCAGATAGTCAAGATGGTCTTTATAATCCAGAAAAAGCTAAGGCTGAATTTGCTAAAGCCAAAGAAGCTCTTCAAGCAGA
AGGGGTTCAGTTCCCAATCCATTTGGATGTTCCTGTCAATCAGTCAAATAAAATCTTTGTGAACCAAGTGCAGTCACTTA
AACAATCTATTGAATCAGCTCTTGGAAAAGATAATGTTGTACTTGATCTTCACCAATTGTCAACTGATGATTTCTATAAC
ATTACCTACTCTGCTTCAAATGCAGCGGCAGAGGATTGGGATTTGTCAGTAGGTGTGGCTTGGGAGCCTGATTACCTTGA
TCCATCAACTTATCTTGATGTTTTGAAGACTACAAATAGTGAAAATACTAAATCTTTCATGGGTTATGACGATCCAAATA
GTCAAGCGGTTGAAAAAGTAGGTCTTAAAGAATATGACCAATTGGTTGATGATGCTTCTAAGGAAACAACAGACTTGACG
GCTCGTTATGAAAAATATGCAAAAGCTCAGGCATGGTTGACGGATAGTGCACTTTATATCCCAACGACTACTTATAACGG
TGCAGCCGCTGTAGTTTCTCGTATTAAGCCATTCTCAGGTGCTTATGCTCAAGCTGGTGATAAAGGTTCTACATACTACT
TCAAGTATCTTAAATCTCAAGATGATATTGTGACTAAGAAACAATACGATTCAGCTTATAAAGATTGGCTTAAAGAAAGA
GCGAAATCTAATGACAAAGCTCAAAAAGATCTTGCCAAACACGTTAAGTAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

69.817

100

0.698
  amiA3 Streptococcus thermophilus LMD-9

68.341

100

0.684
  amiA3 Streptococcus thermophilus LMG 18311

67.58

100

0.677