Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6U63_RS02080 Genome accession   NZ_CP145861
Coordinates   396348..396791 (+) Length   147 a.a.
NCBI ID   WP_195187787.1    Uniprot ID   A0AB35ISB2
Organism   Streptococcus salivarius strain KSS3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 391348..401791
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS02065 (V6U63_02070) gdhA 392397..393749 (+) 1353 WP_002885547.1 NADP-specific glutamate dehydrogenase -
  V6U63_RS02070 (V6U63_02075) - 394348..395595 (+) 1248 WP_227071873.1 YfhO family protein -
  V6U63_RS02075 (V6U63_02080) - 395753..396163 (+) 411 WP_014633541.1 peptide deformylase -
  V6U63_RS02080 (V6U63_02085) rcrR 396348..396791 (+) 444 WP_195187787.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U63_RS02085 (V6U63_02090) rcrP 396795..398609 (+) 1815 WP_195187786.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS02090 (V6U63_02095) rcrQ 398599..400377 (+) 1779 WP_195187785.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS02095 (V6U63_02100) - 400485..401108 (+) 624 WP_195187784.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17218.67 Da        Isoelectric Point: 7.5687

>NTDB_id=940364 V6U63_RS02080 WP_195187787.1 396348..396791(+) (rcrR) [Streptococcus salivarius strain KSS3]
MHGKDPFSEFREFINTMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVASDKDKRYKYVHLTDLGKKKAQDVEHFREAIHEQLLEGISKEDAEIAFRVFHQIRMNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940364 V6U63_RS02080 WP_195187787.1 396348..396791(+) (rcrR) [Streptococcus salivarius strain KSS3]
ATGCATGGAAAAGATCCTTTTAGTGAATTCAGAGAATTCATCAATACTATGGAATCTCGCGTGCAAGAGTTAGGAAAAGT
CCACGGTGTTGAGCATTTAGCTGGTCCACAAGGATTTGCCGTCAGGTATTTGTTTGAGAATCAAGATAAAGAAATCTTTA
TCAAAGACATCGAGAAAAGACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTC
GTTGAATTGGTGGCTTCGGACAAGGATAAACGCTACAAGTATGTTCATTTGACAGACTTGGGTAAAAAGAAGGCCCAAGA
TGTCGAACATTTTCGAGAGGCTATCCATGAACAGCTATTAGAAGGCATTTCGAAAGAGGATGCTGAAATAGCCTTTCGAG
TCTTTCACCAAATTCGTATGAATTTAGAAAAAAATAAGGAGTAG

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558