Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6U63_RS02090 Genome accession   NZ_CP145861
Coordinates   398599..400377 (+) Length   592 a.a.
NCBI ID   WP_195187785.1    Uniprot ID   A0AB35IS50
Organism   Streptococcus salivarius strain KSS3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 393599..405377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS02070 (V6U63_02075) - 394348..395595 (+) 1248 WP_227071873.1 YfhO family protein -
  V6U63_RS02075 (V6U63_02080) - 395753..396163 (+) 411 WP_014633541.1 peptide deformylase -
  V6U63_RS02080 (V6U63_02085) rcrR 396348..396791 (+) 444 WP_195187787.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6U63_RS02085 (V6U63_02090) rcrP 396795..398609 (+) 1815 WP_195187786.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS02090 (V6U63_02095) rcrQ 398599..400377 (+) 1779 WP_195187785.1 ABC transporter ATP-binding protein Regulator
  V6U63_RS02095 (V6U63_02100) - 400485..401108 (+) 624 WP_195187784.1 GNAT family N-acetyltransferase -
  V6U63_RS02100 (V6U63_02105) - 401256..401879 (+) 624 WP_195187783.1 GTP pyrophosphokinase family protein -
  V6U63_RS02105 (V6U63_02110) - 401881..402558 (+) 678 WP_195187782.1 response regulator transcription factor -
  V6U63_RS02110 (V6U63_02115) - 402572..403795 (+) 1224 WP_195187781.1 sensor histidine kinase -
  V6U63_RS02115 (V6U63_02120) pyrH 404032..404769 (+) 738 WP_002885551.1 UMP kinase -
  V6U63_RS02120 (V6U63_02125) frr 404784..405341 (+) 558 WP_002885567.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65086.05 Da        Isoelectric Point: 5.0198

>NTDB_id=940366 V6U63_RS02090 WP_195187785.1 398599..400377(+) (rcrQ) [Streptococcus salivarius strain KSS3]
MENKPKTSSYKRLKPYIKGFQIPFVLAIFGAIISAVITVIGPDKLKEITNTITEGITPTKMGAIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSVL
LVAAIIMMFYSNVTMAFTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNAAQESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940366 V6U63_RS02090 WP_195187785.1 398599..400377(+) (rcrQ) [Streptococcus salivarius strain KSS3]
ATGGAAAATAAGCCAAAAACATCATCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCAAATTCCGTTTGTCCTTGC
GATTTTTGGAGCAATTATTTCAGCGGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATCACACCTACCAAAATGGGGGCGATTCCAGGTATTGATTTGGACAAGGTAGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACCGTTGCGACAGTTACACAACGCTTTTCGCAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTCCCTCTTAATTATTTCGATAGTCACTCTCAAGGGGATACCCTCT
CTCGTGTGACCAATGACGTTGACCTTTTGGGACAATCGCTTAGCCAAGGCTTAGGTACCTTGATTACTTCAAGTGTTCTC
TTGGTGGCAGCCATTATTATGATGTTCTACTCAAATGTCACTATGGCTTTCACTGCGATTGGTTCTGTCTTGATAGGTTT
TGTTCTGGTAGCCTTTATCATGGGCTTCTCACAACCCCTTTTCAAGCGCCAACAAGAAAATTTGGCTAATATTAATGGTT
ATATTGAAGAAATCTACACAGGTCAAGCAGTCGTAACGAGTTACAATGCCGCTCAAGAAAGCAGTCAGGCTTTCAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTGGGTGCCATCAAAGTTATTGATGGTAGCTTGACGATTGGAGATGTGGTGG
CCTTCATGACCTATGTTCGTATCTTCTCCCAACCTCTTTCTCAAATTGCACAAGGGATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAGCCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAATGACATGAAGCGTGAAACCGTTCATGACCA
ATTCTCTATGGTGCTTCAAGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGATGAGCAAGTTATTGCTGCAGCCAAGGCTGTCGGTGTTCACCACTTCATCACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTGTCAGTTGGTCAGAAACAGCTCTTGACCATTGCGCGTGCGCTTCTTAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCAGTTGACACCCGAACAGAAGAGTTGATTCAAAAAGCCATGGACAAGCTTA
TGGAAGGCCGTACTTCCTTTGTTATTGCCCACCGCTTATCAACCATTCGAAATGCTGACCTTATCCTTGTGATGAAAGAT
GGTAACATTATTGAACAGGGCAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691