Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   V6T26_RS07000 Genome accession   NZ_CP145858
Coordinates   1523805..1524806 (-) Length   333 a.a.
NCBI ID   WP_410541148.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1518805..1529806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS06975 (V6T26_06975) - 1519219..1519404 (+) 186 WP_002890454.1 hypothetical protein -
  V6T26_RS06980 (V6T26_06980) eno 1519554..1520858 (-) 1305 WP_002886048.1 surface-displayed alpha-enolase -
  V6T26_RS06985 (V6T26_06985) - 1521064..1521519 (+) 456 WP_021144479.1 YueI family protein -
  V6T26_RS06990 (V6T26_06990) - 1521550..1522665 (-) 1116 WP_410541146.1 glycerate kinase -
  V6T26_RS06995 (V6T26_06995) - 1522678..1523745 (-) 1068 WP_410541147.1 MmcQ/YjbR family DNA-binding protein -
  V6T26_RS07000 (V6T26_07000) ccpA 1523805..1524806 (-) 1002 WP_410541148.1 catabolite control protein A Regulator
  V6T26_RS07005 (V6T26_07005) - 1525121..1526202 (+) 1082 Protein_1368 M24 family metallopeptidase -
  V6T26_RS07010 (V6T26_07010) - 1526299..1526667 (-) 369 WP_002886108.1 S1 RNA-binding domain-containing protein -
  V6T26_RS07015 (V6T26_07015) - 1526669..1528075 (-) 1407 WP_410541149.1 Cof-type HAD-IIB family hydrolase -
  V6T26_RS07020 (V6T26_07020) smpB 1528222..1528686 (-) 465 WP_002885905.1 SsrA-binding protein SmpB -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36649.57 Da        Isoelectric Point: 5.2751

>NTDB_id=940255 V6T26_RS07000 WP_410541148.1 1523805..1524806(-) (ccpA) [Streptococcus salivarius strain KSS11]
MNTDETITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDCLDYRPNAVARGLASKKTTTVGVVIPNIANSYFA
TLARGIDDIATMYKYNIVLASSDENDDHEVTVINSLFAKQVDGIIFMGYHLTEKIRAEFSRTRTPIVLAGTVDLEHQLPS
VNIDYKVAVEDSVTQLAKNNEKVAFVSGPLIDDINGKLRLAGYKAGLEKNNLRYNEGLVFEAKYSYRDGFDLAQRVLNSG
ATAAYVGEDELAAGLLNGLFAAGKSVPEDFEIITSNDSPITSYTRPNLSSINHPLYDLGAVSMRMLTKIMNKEELEEKDV
ILNHGLTLRQSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=940255 V6T26_RS07000 WP_410541148.1 1523805..1524806(-) (ccpA) [Streptococcus salivarius strain KSS11]
ATGAATACTGATGAAACAATCACTATTTATGACGTTGCGCGTGAGGCAGGCGTTTCGATGGCGACTGTGTCTCGTGTGGT
AAATGGAAATAAAAATGTAAAAGAAAACACCCGAAAAAAAGTGCTTGAGGTCATTGATTGTTTGGATTATCGTCCAAATG
CGGTTGCACGTGGCTTGGCGAGTAAGAAAACCACTACTGTAGGAGTTGTCATCCCAAATATTGCTAATAGTTATTTTGCT
ACTTTAGCAAGGGGGATTGATGATATTGCAACGATGTACAAGTACAATATTGTTCTTGCATCTAGTGATGAAAATGACGA
TCACGAAGTTACCGTGATTAACTCTCTATTTGCCAAACAAGTAGATGGTATCATCTTCATGGGTTACCACTTGACGGAAA
AAATTCGTGCAGAATTTTCTCGTACCCGTACTCCGATTGTCCTAGCAGGAACAGTGGACCTCGAGCACCAATTACCGAGC
GTTAATATCGACTATAAAGTTGCCGTTGAGGATTCTGTAACGCAACTTGCCAAGAATAATGAAAAGGTTGCCTTTGTATC
AGGACCACTAATTGATGATATTAATGGCAAACTCCGTCTAGCTGGTTATAAGGCTGGACTTGAAAAGAATAATTTGCGTT
ACAATGAAGGTCTTGTCTTTGAAGCCAAATATAGCTATAGAGATGGCTTTGATTTAGCACAACGTGTTTTGAACTCTGGT
GCCACTGCTGCCTATGTTGGAGAAGATGAATTGGCTGCAGGTCTCTTGAATGGCCTCTTTGCTGCAGGTAAATCAGTTCC
AGAAGACTTCGAAATCATCACAAGCAATGACTCACCAATTACAAGCTACACACGTCCAAACCTTTCTAGTATTAATCATC
CTCTCTATGATTTAGGGGCAGTTAGCATGCGTATGTTGACTAAAATCATGAATAAGGAAGAGCTCGAAGAAAAAGATGTT
ATTCTTAATCACGGTCTTACCTTACGTCAGTCAACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

76.877

100

0.769

  ccpA Streptococcus pneumoniae D39

75.976

100

0.76

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.589

99.399

0.553