Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6T26_RS02385 Genome accession   NZ_CP145858
Coordinates   450429..451124 (+) Length   231 a.a.
NCBI ID   WP_073689618.1    Uniprot ID   A0AAW7PL27
Organism   Streptococcus salivarius strain KSS11     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 445429..456124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS02350 (V6T26_02350) tnpA 445652..446125 (+) 474 WP_013990678.1 IS200/IS605 family transposase -
  V6T26_RS02355 (V6T26_02355) - 446322..446840 (+) 519 WP_410541360.1 hypothetical protein -
  V6T26_RS02360 (V6T26_02360) - 446840..447385 (+) 546 WP_410541361.1 hypothetical protein -
  V6T26_RS02365 (V6T26_02365) - 447414..447683 (-) 270 WP_410541362.1 GIY-YIG nuclease family protein -
  V6T26_RS02370 (V6T26_02370) - 447687..448451 (-) 765 WP_004183185.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6T26_RS02375 (V6T26_02375) - 448501..449436 (-) 936 WP_049545587.1 polysaccharide deacetylase family protein -
  V6T26_RS02380 (V6T26_02380) - 449566..450321 (+) 756 WP_410541363.1 lysophospholipid acyltransferase family protein -
  V6T26_RS02385 (V6T26_02385) comEA 450429..451124 (+) 696 WP_073689618.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6T26_RS02390 (V6T26_02390) comEC/celB 451114..453354 (+) 2241 WP_410541364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6T26_RS02395 (V6T26_02395) - 453440..454702 (+) 1263 WP_060972602.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6T26_RS02400 (V6T26_02400) - 454768..455313 (+) 546 WP_048673823.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24562.54 Da        Isoelectric Point: 4.6817

>NTDB_id=940235 V6T26_RS02385 WP_073689618.1 450429..451124(+) (comEA) [Streptococcus salivarius strain KSS11]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQDSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940235 V6T26_RS02385 WP_073689618.1 450429..451124(+) (comEA) [Streptococcus salivarius strain KSS11]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCTGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACGGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAAGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCGGGCACTAGAGTGACTGA
CGCCATCAAAGCCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGATTCTGACAAAGGA
GGACAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCTGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

40.87

99.567

0.407
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40

99.567

0.398
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364