Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V6T26_RS02055 Genome accession   NZ_CP145858
Coordinates   386891..387925 (+) Length   344 a.a.
NCBI ID   WP_410541530.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 381891..392925
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS02035 (V6T26_02035) - 382627..384732 (+) 2106 WP_070579628.1 AAA family ATPase -
  V6T26_RS02040 (V6T26_02040) - 385380..385679 (-) 300 WP_014634939.1 hypothetical protein -
  V6T26_RS02045 (V6T26_02045) - 385676..386095 (-) 420 WP_037599159.1 HIT family protein -
  V6T26_RS02050 (V6T26_02050) pptA 386160..386891 (+) 732 WP_270616748.1 ABC transporter ATP-binding protein Regulator
  V6T26_RS02055 (V6T26_02055) pptB 386891..387925 (+) 1035 WP_410541530.1 ABC transporter permease Regulator
  V6T26_RS02060 (V6T26_02060) ccrZ 387983..388774 (+) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6T26_RS02065 (V6T26_02065) trmB 388784..389425 (+) 642 WP_151404302.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6T26_RS02075 (V6T26_02075) - 389642..390823 (-) 1182 WP_410541348.1 NAD(P)/FAD-dependent oxidoreductase -
  V6T26_RS02080 (V6T26_02080) ilvD 390936..392654 (+) 1719 WP_014632703.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 39817.28 Da        Isoelectric Point: 10.6261

>NTDB_id=940234 V6T26_RS02055 WP_410541530.1 386891..387925(+) (pptB) [Streptococcus salivarius strain KSS11]
MAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLGHIKKATGRAFRFWVVIQTLIFILVVPLFLALGLPVWGVVLIAVAMAVLKYFIFQKKAQPFYKQSG
LNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKFS
LILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=940234 V6T26_RS02055 WP_410541530.1 386891..387925(+) (pptB) [Streptococcus salivarius strain KSS11]
ATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGATCA
TTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAAATC
CGTGGGCAATCATTCTTGGCCTACTTGTGCTTTGTCTTTTACTGCCTTTTTGGGGCAATATTGCGACTTATTTAGAGCCT
GCGGACAAGCATTACTTGTTGGTTAAGGAAGAAGAGGTGCTAGGCCACATTAAGAAGGCAACAGGGCGTGCTTTTAGATT
TTGGGTGGTCATCCAGACCTTGATTTTTATCTTGGTTGTCCCTCTTTTCTTAGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TTCTCATTGCTGTGGCTATGGCTGTTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGA
CTTAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAATGT
TAAGGGGATTACATCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAACATA
CCTGGTACAATCTTTACCTAAGAGCTTTCTTGCGTTCAGGAGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTAACA
CTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTACTCTTCCA
GCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCGGTTGGAAAAGACATGCAGGTAAGCA
ATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTTAGT
CTGATTTTGGTTGGAATGATGCTTGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-159)

Bacterial ABC transporter protein EcsB (EcsB)

(157-329)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

95.349

100

0.953
  pptB Streptococcus thermophilus LMD-9

93.605

100

0.936