Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6T26_RS01320 Genome accession   NZ_CP145858
Coordinates   233050..233568 (+) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain KSS11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 228311..245166 233050..233568 within 0


Gene organization within MGE regions


Location: 228311..245166
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01290 (V6T26_01290) - 228311..228712 (+) 402 WP_070847552.1 DUF6608 family protein -
  V6T26_RS01295 (V6T26_01295) - 228733..228993 (+) 261 WP_195413502.1 hypothetical protein -
  V6T26_RS01300 (V6T26_01300) - 229142..229267 (+) 126 WP_410541308.1 hypothetical protein -
  V6T26_RS01305 (V6T26_01305) mutY 229289..230440 (-) 1152 WP_410541309.1 A/G-specific adenine glycosylase -
  V6T26_RS01310 (V6T26_01310) - 231605..232543 (-) 939 WP_410541310.1 hypothetical protein -
  V6T26_RS01315 (V6T26_01315) rpsF 232748..233038 (+) 291 WP_038676771.1 30S ribosomal protein S6 -
  V6T26_RS01320 (V6T26_01320) ssb 233050..233568 (+) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  V6T26_RS01325 (V6T26_01325) rpsR 233610..233849 (+) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6T26_RS01330 (V6T26_01330) - 233971..234852 (-) 882 WP_410541311.1 DUF4300 family protein -
  V6T26_RS01335 (V6T26_01335) - 234969..235640 (-) 672 WP_002891841.1 DUF1129 domain-containing protein -
  V6T26_RS01340 (V6T26_01340) - 235709..236653 (-) 945 WP_004183470.1 magnesium transporter CorA family protein -
  V6T26_RS01345 (V6T26_01345) uvrA 236948..239773 (+) 2826 WP_410541312.1 excinuclease ABC subunit UvrA -
  V6T26_RS01350 (V6T26_01350) - 239869..240111 (+) 243 WP_073687362.1 DUF3923 family protein -
  V6T26_RS01355 (V6T26_01355) - 240286..240435 (+) 150 WP_171966959.1 hypothetical protein -
  V6T26_RS01360 (V6T26_01360) - 240472..240672 (+) 201 WP_037602602.1 hypothetical protein -
  V6T26_RS01365 (V6T26_01365) - 240934..241869 (+) 936 WP_107373368.1 IS30 family transposase -
  V6T26_RS01370 (V6T26_01370) - 242000..242860 (+) 861 WP_060972520.1 thioredoxin family protein -
  V6T26_RS01375 (V6T26_01375) - 242990..243811 (+) 822 WP_410541313.1 ABC transporter ATP-binding protein -
  V6T26_RS01380 (V6T26_01380) - 243801..244523 (+) 723 WP_257056746.1 hypothetical protein -
  V6T26_RS01385 (V6T26_01385) tnpA 244693..245166 (+) 474 WP_013990678.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=940229 V6T26_RS01320 WP_002891844.1 233050..233568(+) (ssb) [Streptococcus salivarius strain KSS11]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940229 V6T26_RS01320 WP_002891844.1 233050..233568(+) (ssb) [Streptococcus salivarius strain KSS11]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36