Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   V6T01_RS08900 Genome accession   NZ_CP145856
Coordinates   1928852..1929370 (-) Length   172 a.a.
NCBI ID   WP_002891844.1    Uniprot ID   A0AB33ZBY1
Organism   Streptococcus salivarius strain KSS1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1925767..1934649 1928852..1929370 within 0


Gene organization within MGE regions


Location: 1925767..1934649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS08880 (V6T01_08855) - 1925767..1926711 (+) 945 WP_004183470.1 magnesium transporter CorA family protein -
  V6T01_RS08885 (V6T01_08860) - 1926780..1927451 (+) 672 WP_002891841.1 DUF1129 domain-containing protein -
  V6T01_RS08890 (V6T01_08865) - 1927568..1928449 (+) 882 WP_410541311.1 DUF4300 family protein -
  V6T01_RS08895 (V6T01_08870) rpsR 1928571..1928810 (-) 240 WP_000068665.1 30S ribosomal protein S18 -
  V6T01_RS08900 (V6T01_08875) ssb 1928852..1929370 (-) 519 WP_002891844.1 single-stranded DNA-binding protein Machinery gene
  V6T01_RS08905 (V6T01_08880) rpsF 1929382..1929672 (-) 291 WP_038676771.1 30S ribosomal protein S6 -
  V6T01_RS08910 (V6T01_08885) - 1929877..1930815 (+) 939 WP_410541310.1 hypothetical protein -
  V6T01_RS08915 (V6T01_08890) mutY 1931980..1933131 (+) 1152 WP_410541309.1 A/G-specific adenine glycosylase -
  V6T01_RS08920 (V6T01_08895) - 1933153..1933278 (-) 126 WP_410541308.1 hypothetical protein -
  V6T01_RS08925 (V6T01_08900) - 1933427..1933591 (-) 165 WP_347095454.1 hypothetical protein -
  V6T01_RS08930 (V6T01_08905) - 1933708..1934109 (-) 402 WP_070847552.1 DUF6608 family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18594.32 Da        Isoelectric Point: 4.9163

>NTDB_id=940202 V6T01_RS08900 WP_002891844.1 1928852..1929370(-) (ssb) [Streptococcus salivarius strain KSS1]
MINNVVLVGRMTRDAELRYTPSNVAVATFSLAVNRNFKGANGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRAAREGHSGGSYNAGGFDNSNSFGGGASTGGSFGGSQPAQSTPNFGRDESPFGNS
NPMDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=940202 V6T01_RS08900 WP_002891844.1 1928852..1929370(-) (ssb) [Streptococcus salivarius strain KSS1]
ATGATTAATAATGTCGTACTCGTTGGTCGCATGACCCGTGATGCGGAACTTCGTTATACACCAAGTAATGTTGCAGTTGC
TACATTCAGTCTTGCAGTTAATCGTAACTTCAAGGGTGCTAATGGTGAACGTGAAACTGACTTTATTAACTGTGTTATCT
GGCGCCAGCAAGCTGAAAATTTGGCTAACTGGGCTAAGAAAGGCGCATTGATTGGAATTACAGGTCGTATTCAGACTCGT
AACTATGAAAATCAACAAGGTCAACGTGTATACGTAACTGAAGTTGTCGCTGATAATTTCCAAATGTTGGAAAGCCGTGC
GGCACGTGAAGGTCACAGTGGTGGTTCTTACAACGCTGGAGGATTTGATAATTCAAATTCATTCGGTGGTGGAGCTTCAA
CTGGTGGTTCATTTGGTGGATCACAGCCTGCGCAATCTACACCAAACTTCGGTCGTGACGAGAGTCCATTTGGTAATTCA
AACCCAATGGATATTTCAGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.046

100

0.587
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.301

100

0.587
  ssb Glaesserella parasuis strain SC1401

32.461

100

0.36