Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   V6T01_RS08165 Genome accession   NZ_CP145856
Coordinates   1774496..1775533 (-) Length   345 a.a.
NCBI ID   WP_410541670.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1769496..1780533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS08140 (V6T01_08115) ilvD 1769767..1771485 (-) 1719 WP_014632703.1 dihydroxy-acid dehydratase -
  V6T01_RS08145 (V6T01_08120) - 1771598..1772779 (+) 1182 WP_410541348.1 NAD(P)/FAD-dependent oxidoreductase -
  V6T01_RS08155 (V6T01_08130) trmB 1772996..1773637 (-) 642 WP_151404302.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6T01_RS08160 (V6T01_08135) ccrZ 1773647..1774438 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6T01_RS08165 (V6T01_08140) pptB 1774496..1775533 (-) 1038 WP_410541670.1 ABC transporter permease Regulator
  V6T01_RS08170 (V6T01_08145) pptA 1775530..1776261 (-) 732 WP_270616748.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS08175 (V6T01_08150) - 1776326..1776745 (+) 420 WP_037599159.1 HIT family protein -
  V6T01_RS08180 (V6T01_08155) - 1776742..1777041 (+) 300 WP_014634939.1 hypothetical protein -
  V6T01_RS08185 (V6T01_08160) - 1777689..1779794 (-) 2106 WP_070579628.1 AAA family ATPase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39930.44 Da        Isoelectric Point: 10.6261

>NTDB_id=940197 V6T01_RS08165 WP_410541670.1 1774496..1775533(-) (pptB) [Streptococcus salivarius strain KSS1]
MIAKLFKERSKRFNARCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLKHFPKNPWAIILGLLVLCLLLPFWGNIATYLE
PADKHYLLVKEEEVLGHIKKATGRAFRFWVVIQTLIFILVVPLFLALGLPVWGVVLIAVAMAVLKYFIFQKKAQPFYKQS
GLNWTEAIAGENKRQQSILKFFSLFTNVKGITSSVKRRAYLDAILKRTKKDKEHTWYNLYLRAFLRSGDYFALSLRLFAL
TLLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPVGKDMQVSNLKRLISQIVLGMTLVQAVCLFDLKF
SLILVGMMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=940197 V6T01_RS08165 WP_410541670.1 1774496..1775533(-) (pptB) [Streptococcus salivarius strain KSS1]
ATGATAGCTAAGCTATTTAAGGAGCGTAGCAAGCGATTCAATGCCCGCTGTGCTAAGTATAGTCGCTACGTTTTTAATGA
TCATTTTATCTTGGTTCTTCTCTTTCTGCTAGGCTTTGTCTTGGTTCAGTATAGCCAGTTGCTGAAGCATTTTCCAAAAA
ATCCGTGGGCAATCATTCTTGGCCTACTTGTGCTTTGTCTTTTACTGCCTTTTTGGGGCAATATTGCGACTTATTTAGAG
CCTGCGGACAAGCATTACTTGTTGGTTAAGGAAGAAGAGGTGCTAGGCCACATTAAGAAGGCAACAGGGCGTGCTTTTAG
ATTTTGGGTGGTCATCCAGACCTTGATTTTTATCTTGGTTGTCCCTCTTTTCTTAGCCTTGGGTCTTCCAGTTTGGGGAG
TTGTTCTCATTGCTGTGGCTATGGCTGTTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCT
GGACTTAATTGGACTGAGGCTATTGCAGGAGAAAATAAGCGTCAACAATCGATTCTGAAGTTCTTTTCACTCTTTACCAA
TGTTAAGGGGATTACATCGAGTGTTAAACGCCGTGCTTATTTGGATGCTATTCTCAAACGTACAAAGAAAGACAAGGAAC
ATACCTGGTACAATCTTTACCTAAGAGCTTTCTTGCGTTCAGGAGATTACTTTGCCCTTAGTTTACGCCTGTTTGCCCTA
ACACTTCTAGTTATCTTTTTGGTTCCTGAAAAATGGTTGGCTATGGTGCTTGTGGTTGTTTTTGATTACCTCTTACTCTT
CCAGCTCACAGCACTTAAATCGCACTTTGCTTATCAGAGAATGGCTAACCTTATGCCGGTTGGAAAAGACATGCAGGTAA
GCAATCTTAAGCGCTTGATTAGCCAGATTGTACTTGGGATGACTCTGGTACAGGCTGTTTGTCTCTTCGACCTTAAGTTT
AGTCTGATTTTGGTTGGAATGATGCTTGTTTTGAGCCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(4-160)

Bacterial ABC transporter protein EcsB (EcsB)

(158-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

95.058

99.71

0.948
  pptB Streptococcus thermophilus LMD-9

93.314

99.71

0.93