Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   V6T01_RS08170 Genome accession   NZ_CP145856
Coordinates   1775530..1776261 (-) Length   243 a.a.
NCBI ID   WP_270616748.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1770530..1781261
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS08145 (V6T01_08120) - 1771598..1772779 (+) 1182 WP_410541348.1 NAD(P)/FAD-dependent oxidoreductase -
  V6T01_RS08155 (V6T01_08130) trmB 1772996..1773637 (-) 642 WP_151404302.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  V6T01_RS08160 (V6T01_08135) ccrZ 1773647..1774438 (-) 792 WP_002884270.1 cell cycle regulator CcrZ -
  V6T01_RS08165 (V6T01_08140) pptB 1774496..1775533 (-) 1038 WP_410541670.1 ABC transporter permease Regulator
  V6T01_RS08170 (V6T01_08145) pptA 1775530..1776261 (-) 732 WP_270616748.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS08175 (V6T01_08150) - 1776326..1776745 (+) 420 WP_037599159.1 HIT family protein -
  V6T01_RS08180 (V6T01_08155) - 1776742..1777041 (+) 300 WP_014634939.1 hypothetical protein -
  V6T01_RS08185 (V6T01_08160) - 1777689..1779794 (-) 2106 WP_070579628.1 AAA family ATPase -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26842.06 Da        Isoelectric Point: 4.4174

>NTDB_id=940198 V6T01_RS08170 WP_270616748.1 1775530..1776261(-) (pptA) [Streptococcus salivarius strain KSS1]
MLKLEKVTGGYANIPVLKDVTFEVADGELVGLIGLNGAGKSTTINEIIGLLTPYGGQIAIDGLTIQQDPASYRQKIGYIP
ETPSLYEELTLREHLETVLMAYGLDVTEGMARADKYLKLFRLDEKLDWFPTQFSKGMKQKVMIICAFIVNPSLFIVDEPF
LGLDPLAISDLIELLAEEKANGKAILMSTHVLDSAEKMCDRFVILHHGQVLAQGTLEELRQTFGDDSASLNDIYMQLTKG
ELS

Nucleotide


Download         Length: 732 bp        

>NTDB_id=940198 V6T01_RS08170 WP_270616748.1 1775530..1776261(-) (pptA) [Streptococcus salivarius strain KSS1]
ATGCTTAAATTAGAAAAGGTGACGGGTGGTTACGCTAATATTCCCGTCCTAAAAGATGTGACTTTTGAGGTGGCTGATGG
TGAATTGGTTGGTCTCATTGGTCTTAATGGTGCTGGGAAATCAACAACAATTAACGAGATTATTGGTCTCTTAACACCTT
ATGGGGGACAGATTGCCATTGATGGGTTAACTATTCAACAAGATCCAGCTAGCTATCGTCAGAAGATTGGCTATATTCCT
GAAACGCCAAGTCTCTATGAAGAGTTGACGCTTCGTGAACATTTGGAAACGGTGTTGATGGCCTATGGCCTTGATGTGAC
TGAGGGGATGGCACGTGCGGACAAGTACCTCAAACTCTTTCGCTTAGATGAAAAGTTAGATTGGTTCCCGACTCAGTTTT
CAAAGGGAATGAAGCAGAAGGTCATGATTATCTGTGCCTTTATTGTGAATCCAAGTCTTTTCATTGTTGATGAACCCTTC
TTGGGTTTGGATCCCTTGGCAATCTCCGACCTAATTGAGCTTTTGGCTGAGGAAAAAGCGAATGGTAAGGCGATTCTCAT
GTCGACTCACGTTTTGGATTCGGCTGAAAAAATGTGTGACCGTTTTGTCATCTTGCATCACGGTCAAGTCTTGGCACAGG
GGACTCTCGAGGAGCTCCGTCAGACTTTTGGCGACGATAGTGCCAGTCTTAACGATATTTACATGCAGTTAACTAAGGGA
GAATTGTCATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

99.177

100

0.992
  pptA Streptococcus thermophilus LMD-9

97.942

100

0.979