Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6T01_RS07835 Genome accession   NZ_CP145856
Coordinates   1711297..1711992 (-) Length   231 a.a.
NCBI ID   WP_073689618.1    Uniprot ID   A0AAW7PL27
Organism   Streptococcus salivarius strain KSS1     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1706297..1716992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS07820 (V6T01_07795) - 1707108..1707653 (-) 546 WP_048673823.1 GNAT family N-acetyltransferase -
  V6T01_RS07825 (V6T01_07800) - 1707719..1708981 (-) 1263 WP_060972602.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  V6T01_RS07830 (V6T01_07805) comEC/celB 1709067..1711307 (-) 2241 WP_410541364.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6T01_RS07835 (V6T01_07810) comEA 1711297..1711992 (-) 696 WP_073689618.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6T01_RS07840 (V6T01_07815) - 1712100..1712855 (-) 756 WP_410541363.1 lysophospholipid acyltransferase family protein -
  V6T01_RS07845 (V6T01_07820) - 1712985..1713920 (+) 936 WP_049545587.1 polysaccharide deacetylase family protein -
  V6T01_RS07850 (V6T01_07825) - 1713970..1714734 (+) 765 WP_004183185.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  V6T01_RS07855 (V6T01_07830) - 1714738..1715007 (+) 270 WP_410541362.1 GIY-YIG nuclease family protein -
  V6T01_RS07860 (V6T01_07835) - 1715036..1715581 (-) 546 WP_410541361.1 hypothetical protein -
  V6T01_RS07865 (V6T01_07840) - 1715581..1716099 (-) 519 WP_410541360.1 hypothetical protein -
  V6T01_RS07870 (V6T01_07845) tnpA 1716296..1716769 (-) 474 WP_013990678.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 231 a.a.        Molecular weight: 24562.54 Da        Isoelectric Point: 4.6817

>NTDB_id=940196 V6T01_RS07835 WP_073689618.1 1711297..1711992(-) (comEA) [Streptococcus salivarius strain KSS1]
MKEKILAYVKDNRLFVSVIAVLMVIFCFFLWMTCGAGNSMEAETSYTDVTTLSTSSSKEGSKSLTEVSSQSKTEESEKDK
SKVTVDVKGAVVKPGVYTLKAGTRVTDAIKAAGGMTEDADAKSVNLAASLSDEEVIYVATKDENLSVLGQSGTSQDSDKG
GQTNAKDGKINLNTATAEELQTISGIGAKRAEDIIAYRESHGGFQSVDDLKNVSGIGDKTLDKIRESLYVA

Nucleotide


Download         Length: 696 bp        

>NTDB_id=940196 V6T01_RS07835 WP_073689618.1 1711297..1711992(-) (comEA) [Streptococcus salivarius strain KSS1]
GTGAAGGAAAAGATTCTAGCCTATGTCAAAGATAATCGTCTGTTTGTGAGTGTCATCGCTGTACTGATGGTGATTTTTTG
CTTCTTTCTATGGATGACTTGTGGTGCTGGCAACAGCATGGAGGCGGAGACGTCTTATACAGATGTGACAACATTGTCAA
CCTCCTCATCCAAAGAAGGGTCAAAATCACTTACTGAAGTGTCTTCTCAGTCAAAGACGGAAGAAAGTGAAAAGGATAAG
TCAAAAGTAACAGTGGATGTTAAAGGAGCCGTAGTCAAGCCAGGGGTTTATACGCTAAAAGCGGGCACTAGAGTGACTGA
CGCCATCAAAGCCGCTGGGGGAATGACCGAGGATGCGGATGCTAAGAGTGTTAATTTAGCCGCAAGCTTGTCAGACGAAG
AGGTTATCTATGTGGCAACTAAGGATGAAAACCTTTCTGTCCTTGGTCAATCAGGAACTAGTCAGGATTCTGACAAAGGA
GGACAAACTAATGCTAAGGATGGGAAAATTAACTTAAATACAGCGACTGCAGAGGAATTGCAAACCATTTCTGGAATTGG
AGCTAAGCGAGCAGAGGATATCATCGCCTATCGCGAAAGTCATGGCGGCTTTCAGTCTGTAGATGACCTGAAAAATGTTT
CAGGAATTGGTGATAAAACATTAGATAAAATCAGAGAGTCCCTCTATGTGGCTTAA

Domains

Predicted by InterproScan.

SLBB domain (SLBB)

(85-138)

Helix-hairpin-helix motif (HHH_3)

(168-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Streptococcus thermophilus LMD-9

89.177

100

0.892
  comEA/celA/cilE Streptococcus mitis SK321

40.87

99.567

0.407
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40

99.567

0.398
  comEA Latilactobacillus sakei subsp. sakei 23K

34.855

100

0.364