Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   V6T01_RS02145 Genome accession   NZ_CP145856
Coordinates   402637..403080 (+) Length   147 a.a.
NCBI ID   WP_064523740.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 397637..408080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS02130 (V6T01_02120) gdhA 398701..400053 (+) 1353 WP_037597452.1 NADP-specific glutamate dehydrogenase -
  V6T01_RS02135 (V6T01_02125) - 400547..401881 (+) 1335 WP_410541675.1 hypothetical protein -
  V6T01_RS02140 (V6T01_02130) - 402038..402448 (+) 411 WP_002886693.1 peptide deformylase -
  V6T01_RS02145 (V6T01_02135) rcrR 402637..403080 (+) 444 WP_064523740.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6T01_RS02150 (V6T01_02140) rcrP 403084..404898 (+) 1815 WP_410541211.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS02155 (V6T01_02145) rcrQ 404888..406666 (+) 1779 WP_410541210.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS02160 (V6T01_02150) - 406774..407397 (+) 624 WP_155222314.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17064.44 Da        Isoelectric Point: 8.5092

>NTDB_id=940167 V6T01_RS02145 WP_064523740.1 402637..403080(+) (rcrR) [Streptococcus salivarius strain KSS1]
MHGKDPFSDFREIINAMESRVQELGKVHGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKRLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHEQLLEGISKEDAETAFRVFHQIHKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=940167 V6T01_RS02145 WP_064523740.1 402637..403080(+) (rcrR) [Streptococcus salivarius strain KSS1]
ATGCATGGAAAAGATCCTTTTAGTGACTTCAGAGAAATCATCAATGCTATGGAATCTCGCGTGCAAGAGTTAGGGAAGGT
CCACGGTGTTGAACATTTAGCCGGCCCACAAGGATTTGCTGTCAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATCGAGAAAAGACTATCTATTTCCAAGTCTGTGGCTAGTAATCTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCGGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTGGGTAAAAAGAAGGCCCAAGA
TGTTGGACATTTCCGAGAGGCTATCCATGAACAGTTATTAGAAGGCATTTCGAAAGAGGATGCTGAAACAGCTTTTCGGG
TCTTTCACCAAATTCATAAGAATTTAGAAAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

58.156

95.918

0.558