Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   V6T01_RS02155 Genome accession   NZ_CP145856
Coordinates   404888..406666 (+) Length   592 a.a.
NCBI ID   WP_410541210.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 399888..411666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS02135 (V6T01_02125) - 400547..401881 (+) 1335 WP_410541675.1 hypothetical protein -
  V6T01_RS02140 (V6T01_02130) - 402038..402448 (+) 411 WP_002886693.1 peptide deformylase -
  V6T01_RS02145 (V6T01_02135) rcrR 402637..403080 (+) 444 WP_064523740.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  V6T01_RS02150 (V6T01_02140) rcrP 403084..404898 (+) 1815 WP_410541211.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS02155 (V6T01_02145) rcrQ 404888..406666 (+) 1779 WP_410541210.1 ABC transporter ATP-binding protein Regulator
  V6T01_RS02160 (V6T01_02150) - 406774..407397 (+) 624 WP_155222314.1 GNAT family N-acetyltransferase -
  V6T01_RS02165 (V6T01_02155) - 407547..408170 (+) 624 WP_410531807.1 GTP pyrophosphokinase family protein -
  V6T01_RS02170 (V6T01_02160) - 408172..408849 (+) 678 WP_410531808.1 response regulator transcription factor -
  V6T01_RS02175 (V6T01_02165) - 408863..410086 (+) 1224 WP_198463442.1 sensor histidine kinase -
  V6T01_RS02180 (V6T01_02170) pyrH 410323..411060 (+) 738 WP_002885551.1 UMP kinase -
  V6T01_RS02185 (V6T01_02175) frr 411075..411632 (+) 558 WP_002886708.1 ribosome recycling factor -

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 65034.01 Da        Isoelectric Point: 4.9487

>NTDB_id=940169 V6T01_RS02155 WP_410541210.1 404888..406666(+) (rcrQ) [Streptococcus salivarius strain KSS1]
MENKPKTSSYKRLKPYIKGFPIPFVLAIVGAIISAVITVIGPDKLKEITNTITEGITPTKMGTIPGIDLDKVASIAMTLA
VLYAISAIVGYLQSFTVATVTQRFSQRFRTAIQKKINSVPLNYFDSHSQGDTLSRVTNDVDLLGQSLSQGLGTLITSSIL
LVAAIIMMFYSNVTMALTAIGSVLIGFVLVAFIMGFSQPLFKRQQENLANINGYIEEIYTGQAVVTSYNASEESSQAFKG
LNDKLYKSMWQSQFISGIMMPLMIFIGNFGYVMVCLVGAIKVIDGSLTIGDVVAFMTYVRIFSQPLSQIAQGITQLQSAT
AAIGRIFEFLEEKDMDDESAKTAELTDTKGQVVFDHVSFGYTPEKTIIHDFSALAKPGQKIAIVGPTGAGKTTIVNLLMK
FYNIDQGRITIDGVDTNDMKRETVHDQFSMVLQDTWLFEGTIRDNLIYNQENISDEQVIAAAKAVGVHHFITTLPKGYDT
YLDDSVTLSVGQKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDKLMEGRTSFVIAHRLSTIRNADLILVMKD
GNIIEQGNHDELMAADGFYADLYNSQFTEEVA

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=940169 V6T01_RS02155 WP_410541210.1 404888..406666(+) (rcrQ) [Streptococcus salivarius strain KSS1]
ATGGAAAATAAGCCAAAAACATCGTCCTATAAACGCTTAAAACCCTATATTAAAGGTTTCCCAATTCCCTTTGTCCTTGC
GATTGTTGGAGCAATTATTTCAGCAGTCATTACAGTTATTGGACCAGATAAGCTTAAAGAAATTACCAATACTATTACTG
AAGGTATTACACCTACCAAAATGGGGACGATTCCAGGTATTGATTTGGATAAGGTGGCAAGTATTGCTATGACCTTGGCT
GTTCTCTATGCCATTTCAGCGATTGTGGGTTACTTACAAAGCTTTACGGTTGCGACAGTTACACAACGTTTTTCACAACG
TTTCCGTACAGCTATCCAAAAGAAAATCAACAGTGTTCCCCTTAATTATTTTGACAGTCATTCTCAAGGGGACACCCTCT
CTCGTGTGACTAATGACGTTGACCTTTTGGGACAATCTCTTAGTCAAGGTTTGGGTACCCTAATTACTTCAAGTATTCTC
TTGGTCGCAGCCATTATTATGATGTTTTACTCAAATGTCACTATGGCTCTCACTGCGATTGGTTCTGTCTTGATAGGATT
TGTTCTAGTAGCCTTCATCATGGGTTTCTCACAACCCCTTTTCAAACGTCAACAAGAAAATTTAGCTAACATTAATGGAT
ATATTGAAGAAATCTACACAGGTCAAGCAGTTGTAACGAGTTACAATGCATCTGAAGAAAGTAGTCAAGCTTTTAAGGGG
CTTAATGATAAACTCTATAAATCGATGTGGCAATCACAGTTTATCTCAGGTATTATGATGCCACTTATGATTTTCATTGG
GAACTTTGGTTATGTCATGGTCTGTCTTGTAGGTGCTATCAAAGTTATTGATGGTAGCTTGACTATTGGTGATGTGGTAG
CCTTCATGACCTATGTTCGTATCTTCTCACAACCTCTTTCTCAAATTGCCCAAGGAATTACACAACTCCAATCAGCTACT
GCAGCCATTGGTCGTATCTTTGAATTTTTGGAAGAAAAAGATATGGACGACGAGTCAGCTAAGACAGCTGAGTTGACAGA
TACTAAAGGTCAAGTAGTCTTTGACCATGTTTCCTTTGGTTATACTCCTGAAAAGACTATTATTCATGACTTTTCAGCTC
TTGCTAAACCAGGTCAAAAGATTGCGATCGTTGGTCCAACGGGTGCTGGTAAGACGACTATTGTTAACCTGCTTATGAAG
TTCTATAACATCGACCAAGGTCGTATCACCATTGACGGTGTGGATACTAACGACATGAAGCGTGAAACCGTTCATGACCA
ATTTTCTATGGTGCTTCAGGACACTTGGCTCTTTGAAGGTACTATTCGTGATAATTTGATTTACAACCAAGAGAATATTT
CTGACGAGCAAGTTATTGCTGCAGCCAAGGCCGTCGGTGTTCACCACTTCATTACCACACTTCCAAAGGGTTATGATACT
TATTTGGATGATTCTGTGACCTTATCAGTTGGACAGAAGCAGCTCTTGACCATTGCACGTGCCCTTCTGAAGGATGCCCC
TCTTCTTATCTTGGATGAAGCGACATCATCTGTTGATACCAGAACAGAAGAATTGATTCAAAAAGCCATGGACAAACTTA
TGGAAGGTCGGACTTCCTTTGTCATTGCTCACCGCTTATCAACTATTAGAAATGCTGATCTTATCCTTGTGATGAAAGAT
GGGAATATTATTGAACAAGGAAATCATGATGAGCTCATGGCAGCAGATGGTTTCTATGCTGATCTTTATAATAGTCAATT
TACAGAAGAAGTTGCCTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(371-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

69.088

100

0.691