Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V6Z34_RS18000 Genome accession   NZ_CP145817
Coordinates   3594622..3595311 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain WH-7     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3589622..3600311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS17965 - 3589820..3590302 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V6Z34_RS17970 flgM 3590317..3590583 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6Z34_RS17975 - 3590653..3591072 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  V6Z34_RS17980 comFC 3591146..3591835 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  V6Z34_RS17985 - 3591841..3592125 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  V6Z34_RS17990 comFA 3592183..3593568 (-) 1386 WP_057080261.1 DEAD/DEAH box helicase Machinery gene
  V6Z34_RS17995 - 3593676..3594524 (-) 849 WP_243662308.1 DegV family protein -
  V6Z34_RS18000 degU 3594622..3595311 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V6Z34_RS18005 degS 3595388..3596551 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator
  V6Z34_RS18010 - 3596773..3597420 (+) 648 WP_003151384.1 YigZ family protein -
  V6Z34_RS18015 - 3597425..3598639 (+) 1215 WP_003151383.1 LCP family protein -
  V6Z34_RS18020 - 3598729..3599805 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=940128 V6Z34_RS18000 WP_003219701.1 3594622..3595311(-) (degU) [Bacillus velezensis strain WH-7]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=940128 V6Z34_RS18000 WP_003219701.1 3594622..3595311(-) (degU) [Bacillus velezensis strain WH-7]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1