Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V6Z34_RS17980 Genome accession   NZ_CP145817
Coordinates   3591146..3591835 (-) Length   229 a.a.
NCBI ID   WP_196616643.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3586146..3596835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS17945 fliW 3586237..3586668 (-) 432 WP_063174505.1 flagellar assembly protein FliW -
  V6Z34_RS17950 - 3586698..3587267 (-) 570 WP_003151397.1 DUF6470 family protein -
  V6Z34_RS17955 flgL 3587358..3588275 (-) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  V6Z34_RS17960 flgK 3588287..3589804 (-) 1518 WP_003151395.1 flagellar hook-associated protein FlgK -
  V6Z34_RS17965 - 3589820..3590302 (-) 483 WP_003151394.1 flagellar protein FlgN -
  V6Z34_RS17970 flgM 3590317..3590583 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6Z34_RS17975 - 3590653..3591072 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  V6Z34_RS17980 comFC 3591146..3591835 (-) 690 WP_196616643.1 phosphoribosyltransferase family protein Machinery gene
  V6Z34_RS17985 - 3591841..3592125 (-) 285 WP_022553866.1 late competence development ComFB family protein -
  V6Z34_RS17990 comFA 3592183..3593568 (-) 1386 WP_057080261.1 DEAD/DEAH box helicase Machinery gene
  V6Z34_RS17995 - 3593676..3594524 (-) 849 WP_243662308.1 DegV family protein -
  V6Z34_RS18000 degU 3594622..3595311 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V6Z34_RS18005 degS 3595388..3596551 (-) 1164 WP_003151385.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25259.95 Da        Isoelectric Point: 8.4880

>NTDB_id=940126 V6Z34_RS17980 WP_196616643.1 3591146..3591835(-) (comFC) [Bacillus velezensis strain WH-7]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCTICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFGRDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=940126 V6Z34_RS17980 WP_196616643.1 3591146..3591835(-) (comFC) [Bacillus velezensis strain WH-7]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCACCATATGCAGCAGCCGATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTAGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGGACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCGGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603