Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   V6Z34_RS01785 Genome accession   NZ_CP145817
Coordinates   352467..352904 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain WH-7     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 347467..357904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6Z34_RS01745 - 348045..348209 (-) 165 WP_370648487.1 molybdopterin dinucleotide binding domain-containing protein -
  V6Z34_RS01750 - 348323..349525 (+) 1203 WP_317236366.1 GTP-binding protein -
  V6Z34_RS01755 - 349590..350726 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  V6Z34_RS01760 - 350741..351175 (+) 435 WP_003156592.1 RDD family protein -
  V6Z34_RS01765 - 351294..351569 (+) 276 WP_369719109.1 YckD family protein -
  V6Z34_RS01770 - 351673..351789 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  V6Z34_RS01775 - 351788..352006 (+) 219 Protein_309 family 1 glycosylhydrolase -
  V6Z34_RS01780 nin/comJ 352047..352445 (-) 399 WP_003156589.1 competence protein ComJ Regulator
  V6Z34_RS01785 nucA/comI 352467..352904 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  V6Z34_RS01790 hxlB 353263..353820 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  V6Z34_RS01795 hxlA 353817..354452 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  V6Z34_RS01800 - 354684..355046 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=940068 V6Z34_RS01785 WP_003156588.1 352467..352904(-) (nucA/comI) [Bacillus velezensis strain WH-7]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=940068 V6Z34_RS01785 WP_003156588.1 352467..352904(-) (nucA/comI) [Bacillus velezensis strain WH-7]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCCTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGGCATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCTGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAATGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCTTGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641