Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACE4VX_RS24650 Genome accession   NZ_CP169752
Coordinates   5288073..5290181 (+) Length   702 a.a.
NCBI ID   WP_253571391.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain ACCC 15027     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5283073..5295181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACE4VX_RS24640 mfd 5284081..5287599 (-) 3519 WP_253571389.1 transcription-repair coupling factor -
  ACE4VX_RS24645 - 5287596..5287886 (-) 291 WP_038932960.1 succinate dehydrogenase assembly factor 2 -
  ACE4VX_RS24650 recG 5288073..5290181 (+) 2109 WP_253571391.1 ATP-dependent DNA helicase RecG Machinery gene
  ACE4VX_RS24655 panE 5290178..5291107 (-) 930 WP_253571393.1 2-dehydropantoate 2-reductase -
  ACE4VX_RS24660 - 5291307..5292137 (-) 831 WP_212451308.1 helix-turn-helix domain-containing protein -
  ACE4VX_RS24665 - 5292234..5292623 (-) 390 WP_253571395.1 nuclear transport factor 2 family protein -
  ACE4VX_RS24670 - 5292799..5293320 (+) 522 WP_038932965.1 ATPase AAA -
  ACE4VX_RS24675 - 5293349..5294206 (-) 858 WP_028158735.1 NAD(P)-dependent oxidoreductase -
  ACE4VX_RS24680 - 5294312..5295082 (-) 771 WP_038932967.1 DUF502 domain-containing protein -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77064.27 Da        Isoelectric Point: 8.6818

>NTDB_id=940036 ACE4VX_RS24650 WP_253571391.1 5288073..5290181(+) (recG) [Bradyrhizobium japonicum strain ACCC 15027]
MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTIDRHRPP
PPRNARAPYLVFASDDTGDVVLTFFRAKPGYVEKLLPVGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAIAKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTPSQRNAAAAIAEDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFSDLALAVVD
EQHRFGVRERLALTSKGAAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLDEVTDSIGRALQA
GKLAYWICPLVEESEAEGTEHLTNATKRFESLQRRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=940036 ACE4VX_RS24650 WP_253571391.1 5288073..5290181(+) (recG) [Bradyrhizobium japonicum strain ACCC 15027]
ATGCGCCCCAGCCTGCTCAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGCCCGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCGGTCCAGGGAACCATGGTGACGCTGGAGGTCACCATCGATCGCCATCGCCCGCCT
CCGCCGCGCAATGCGCGCGCCCCGTATCTCGTCTTTGCCAGCGACGATACCGGCGACGTCGTGCTGACCTTCTTCCGCGC
CAAACCCGGCTACGTCGAAAAACTGCTGCCTGTTGGCGAGAAGCGCTACGTCTCGGGCACGCTCCAGATGTATGACGGCA
TCCCGCAGATCGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATCGCAAAACTCTCCGGCATCGACCCGGTCTATCCG
CTGACCACGGGTCTGGCGCTCGGCTCGCTGCGACGCGCGGTCGCCCAAGCGCTGCAGAAGCTGCCCGCTTTGCCGGAATG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAGGCGCTCAGCCGCGTGCATCAACCGGTCGAGC
TCACCGACATCCTGCCCGAAAAGCCCTACTGGTCGCGCCTCGCCTTCGACGAGCTGTTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCGCAATTGCGCCGTCCCGCCGGCGTCCGCAATGCCGGCGACGGCCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCCCTGACCCCGTCCCAGCGCAACGCCGCGGCCGCCATCGCCGAGGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACCGTCGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAAGCCGCGCTGATGGCGCCGACGGAAATCTTGGCGCGGCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
GGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAGGGCAAGGAGCGGCGCGAGCTGTTGGCGCAACTCGAAGCCGGCG
AGATCAATCTCCTCGTCGGCACCCATGCGCTGATCCAGGACGACGTGATCTTCAGCGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGCGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGCCGCCGTCGACGTGCTGGTGCTGAGCGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCAGCGAGCTCCGCGAAAAGCCCGCCGGCC
GCCAGCCGATCGAGACCCGCACCATCTCGATGAGCCGCCTCGACGAGGTCACCGATAGCATCGGCCGCGCGTTGCAGGCG
GGCAAGCTGGCCTACTGGATCTGCCCGCTGGTCGAGGAATCCGAGGCCGAAGGCACCGAGCACCTGACCAATGCGACCAA
GCGCTTCGAGAGCCTGCAAAGGCGCTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GCGTGATGGGCCAGTTCGCCGCCCATGAGATCGGCCTTCTGGTTGCGACCACCGTGGTCGAGGTCGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGGTTTGGCTTGGCCCAGCTGCACCAGCTGCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCCTTCTCTACTCGGAGCCGCTCGGCGAAATGTCCAAGGCACGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTCCGCATCGCCGAGGAGGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTGGGGGTCCGCCAG
AGCGGCCTGCCCGGCTACCGCATCGCGCGGTCGGAGGTGCACGGCCAGCTCATCACCCAGGCCAGAGACGAGGCGCTGCG
TATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGCGGCGAGGCGCTACGGTGCCTGCTGTATCTCTATGAGCGGGACG
AGGCGATCCCGCTGATCGGAGCGGGTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(296-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)

Helicase conserved C-terminal domain (Helicase_C)

(500-588)

RecG wedge domain (RecG_wedge)

(18-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

43.164

92.735

0.4
  recG Bacillus subtilis subsp. subtilis str. 168

39.079

95.869

0.375
  recG/mmsA Streptococcus pneumoniae R6

39.006

94.587

0.369
  recG/mmsA Streptococcus pneumoniae R36A

39.006

94.587

0.369