Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6093_RS25075 Genome accession   NZ_CP145799
Coordinates   5535372..5537588 (+) Length   738 a.a.
NCBI ID   WP_265978457.1    Uniprot ID   -
Organism   Pseudomonas putida group bacterium ESBL64     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5530372..5542588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6093_RS25055 (V6093_24955) - 5532248..5532871 (+) 624 WP_047604511.1 glutathione S-transferase -
  V6093_RS25060 (V6093_24960) - 5533005..5533937 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  V6093_RS25065 (V6093_24965) - 5533934..5534713 (+) 780 WP_047604512.1 ABC transporter permease -
  V6093_RS25070 (V6093_24970) - 5534723..5535229 (-) 507 Protein_4919 DUF2062 domain-containing protein -
  V6093_RS25075 (V6093_24975) comA 5535372..5537588 (+) 2217 WP_265978457.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6093_RS25080 (V6093_24980) exbB 5537744..5538379 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6093_RS25085 (V6093_24985) - 5538376..5538810 (+) 435 WP_014859651.1 biopolymer transporter ExbD -
  V6093_RS25090 (V6093_24990) lpxK 5538810..5539811 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  V6093_RS25095 (V6093_24995) - 5539856..5540041 (+) 186 WP_003247142.1 Trm112 family protein -
  V6093_RS25100 (V6093_25000) kdsB 5540038..5540802 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6093_RS25105 (V6093_25005) - 5540802..5541266 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  V6093_RS25110 (V6093_25010) murB 5541263..5542282 (+) 1020 WP_047604515.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79634.57 Da        Isoelectric Point: 10.4274

>NTDB_id=939925 V6093_RS25075 WP_265978457.1 5535372..5537588(+) (comA) [Pseudomonas putida group bacterium ESBL64]
MRTGMFALALGLLCLGFLPALPSVGWLITLAACAVGSLFTRVWPLGWFLLGLCWACGSAQQALDDRLAAGLEGRTLWLEG
RVAGLPARTAQGVRFELEVPRSRRAELPQRLQLSWFDGPPLRAGEQWRLAVTLQRPAGLLNPHGPDREAQLLARRVGATG
TVKAGQLLAPVAGGWRDALRQRLLMVEANGRQAALVALVLGDGAGMAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAFFPLLVALVAVLVFEPL
AALLPGFWLSFAAVATLIYCFSARLGGWRPWQAWTRAQWVIAVGLLPVLLATGLPVSLSAPLANLVAVPWVSLAVLPLAL
LGTLMLPLAGVGEALLWLAGGLLDVLFRGLALVAQQRPAWVPPALPWWAWLLVCLGALLLLLPRGVPLRGLGGVMLLALW
VPREPVPFGQIEVWQLDVGQGLAVLLRTRHHSLLYDAGPARGESDLGERVVLPTLRKLGVGGLDVMVISHAHADHAGGAE
AIARGLPIKRIIGGEALVDVPLQPCASGEQWDWDGVRFSLWRWVDGQSSNDRSCVLLVEAQGERLLLAGDVEAAAERAWL
ADTEVPRIDWLQAPHHGSRSSSTEAFVRATAPRGVLISRGRNNSFGHPHVQVVERYKRHGVVMHDTAVEGALRLVLGRHG
EVEGVRRQRRFWRDVGGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=939925 V6093_RS25075 WP_265978457.1 5535372..5537588(+) (comA) [Pseudomonas putida group bacterium ESBL64]
ATGCGCACAGGGATGTTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTGCCCGCATTGCCATCGGTCGGATGGTT
GATAACCCTGGCAGCCTGCGCTGTCGGCAGCCTGTTTACCCGCGTATGGCCGTTGGGATGGTTTCTGCTGGGCTTGTGTT
GGGCGTGCGGGTCTGCTCAGCAGGCCCTTGATGATCGTCTGGCTGCCGGCCTGGAGGGGCGCACCTTGTGGCTGGAGGGG
CGGGTGGCGGGTTTGCCGGCCCGCACTGCACAAGGCGTGCGTTTCGAGCTGGAAGTGCCACGCTCGCGGCGGGCCGAACT
GCCTCAGCGTTTGCAACTGAGCTGGTTCGATGGGCCGCCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AACGCCCGGCCGGGCTGCTGAACCCGCACGGGCCTGACCGGGAAGCGCAGTTGCTGGCGCGACGGGTGGGGGCTACGGGT
ACGGTCAAGGCGGGGCAGTTGCTGGCGCCAGTCGCCGGTGGTTGGCGCGATGCGCTGCGTCAGCGCTTGCTGATGGTCGA
AGCCAATGGCCGGCAGGCAGCGCTGGTGGCACTGGTGCTTGGCGATGGTGCGGGCATGGCCCGGGAGGATTGGCAGACGT
TGCAGGCCACCGGCACGGTGCACCTGCTGGTGATTTCCGGCCAGCACATCGGCCTGGTCGCCGGTTTGCTCTATGGCCTG
GTCGCCGGGCTGGCGCGTTGGGGGCTATGGCCGGCAAGGCTACCGTGGTTACCCTGGGCCTGTGGCCTGGCCATGGCCGC
AGCGCTGGCCTACGGGTGGCTGGCGGGTGGTGGGGTGCCAGTGCAGCGGGCCTGTCTGATGCTGGCCGTGGTGCTGCTCT
GGCGTCTGCGCTTTCGCCACCTTGGCGCTTTTTTTCCGTTGCTGGTTGCACTGGTCGCTGTGCTTGTCTTCGAGCCACTG
GCGGCGTTGCTGCCTGGGTTCTGGCTGTCGTTCGCCGCCGTGGCCACGCTCATCTACTGCTTCAGTGCCCGGTTGGGTGG
CTGGCGGCCCTGGCAGGCCTGGACACGAGCGCAATGGGTGATCGCTGTCGGCTTGCTGCCGGTGTTGCTGGCCACGGGCT
TGCCGGTGAGCTTGAGTGCGCCGCTGGCCAATCTTGTGGCGGTGCCGTGGGTCAGCCTGGCGGTCTTGCCGTTGGCGTTG
TTGGGCACGCTGATGTTGCCGCTGGCGGGTGTTGGCGAGGCGTTGCTCTGGCTGGCAGGTGGCCTGCTGGATGTGCTGTT
CCGCGGGCTGGCGCTGGTGGCGCAGCAGCGCCCGGCATGGGTGCCGCCGGCCCTGCCGTGGTGGGCCTGGCTGCTGGTAT
GTCTGGGTGCGCTGTTGCTTTTGCTGCCTCGTGGTGTGCCGCTGCGCGGGTTGGGAGGGGTGATGCTGCTGGCGCTGTGG
GTACCCAGGGAGCCGGTGCCGTTTGGCCAAATCGAGGTCTGGCAGCTGGATGTCGGCCAGGGGCTGGCGGTGCTCTTGCG
TACGCGGCATCACAGCCTGCTTTACGATGCCGGGCCGGCCAGGGGGGAAAGCGACTTGGGGGAACGCGTGGTGCTGCCAA
CCTTGCGCAAGCTGGGGGTGGGCGGCCTTGACGTGATGGTGATCAGCCATGCGCATGCCGATCATGCGGGCGGGGCCGAG
GCCATTGCGCGTGGTTTGCCGATCAAGCGGATAATCGGTGGGGAAGCGCTGGTTGATGTTCCGTTGCAGCCTTGTGCCAG
TGGCGAGCAATGGGACTGGGATGGCGTGCGTTTTTCGTTGTGGCGCTGGGTGGACGGGCAGAGCAGTAATGACCGTTCCT
GTGTGCTGTTGGTCGAGGCGCAGGGCGAGCGCTTGCTGCTGGCGGGGGATGTGGAAGCTGCCGCCGAACGGGCCTGGCTG
GCGGACACTGAAGTGCCGCGTATCGACTGGCTGCAGGCGCCGCATCATGGCAGTCGCAGCTCGTCCACCGAGGCGTTCGT
CCGGGCTACCGCACCGCGCGGGGTATTGATTTCGCGGGGGCGCAACAACAGCTTCGGGCACCCCCACGTGCAGGTGGTCG
AGCGGTATAAGCGGCATGGGGTGGTGATGCATGATACGGCAGTGGAGGGGGCATTGCGGTTGGTGCTGGGGCGGCATGGG
GAGGTTGAGGGTGTGCGCCGACAGCGGCGATTCTGGCGTGATGTGGGGGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Competence protein (Competence)

(198-464)

Domain of unknown function (DUF4131) (DUF4131)

(12-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

58.53

97.696

0.572
  comA Ralstonia pseudosolanacearum GMI1000

34.694

100

0.369