Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6093_RS25080 Genome accession   NZ_CP145799
Coordinates   5537744..5538379 (+) Length   211 a.a.
NCBI ID   WP_003247132.1    Uniprot ID   A0AAD2WBR1
Organism   Pseudomonas putida group bacterium ESBL64     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5532744..5543379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6093_RS25060 (V6093_24960) - 5533005..5533937 (+) 933 WP_003247127.1 ABC transporter ATP-binding protein -
  V6093_RS25065 (V6093_24965) - 5533934..5534713 (+) 780 WP_047604512.1 ABC transporter permease -
  V6093_RS25070 (V6093_24970) - 5534723..5535229 (-) 507 Protein_4919 DUF2062 domain-containing protein -
  V6093_RS25075 (V6093_24975) comA 5535372..5537588 (+) 2217 WP_265978457.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6093_RS25080 (V6093_24980) exbB 5537744..5538379 (+) 636 WP_003247132.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6093_RS25085 (V6093_24985) - 5538376..5538810 (+) 435 WP_014859651.1 biopolymer transporter ExbD -
  V6093_RS25090 (V6093_24990) lpxK 5538810..5539811 (+) 1002 WP_014859650.1 tetraacyldisaccharide 4'-kinase -
  V6093_RS25095 (V6093_24995) - 5539856..5540041 (+) 186 WP_003247142.1 Trm112 family protein -
  V6093_RS25100 (V6093_25000) kdsB 5540038..5540802 (+) 765 WP_003247143.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6093_RS25105 (V6093_25005) - 5540802..5541266 (+) 465 WP_004575950.1 low molecular weight protein-tyrosine-phosphatase -
  V6093_RS25110 (V6093_25010) murB 5541263..5542282 (+) 1020 WP_047604515.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3616

>NTDB_id=939926 V6093_RS25080 WP_003247132.1 5537744..5538379(+) (exbB) [Pseudomonas putida group bacterium ESBL64]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=939926 V6093_RS25080 WP_003247132.1 5537744..5538379(+) (exbB) [Pseudomonas putida group bacterium ESBL64]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGTGCCAGCCGCGTCACCCCGCCCCACCTGCTGGGCCAGGTGTGGATGTGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCGCTGCGGGCCGATTCGCCACTGGGCGAAATCCTGGCAGCGGGCCTCGCCAAC
TCGCGCCATGGTCGTGAAATCATGAAAGAGTGCATCGAGGAGGCCGCCTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCGCCTCTGCTGGGCCTGCTGGGCACCGTGCTGGGCATGATCGACATTTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCCGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACTGCG
GCAGGCCTGATGGTCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTGGTCGGCAT
GGAGCAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825