Detailed information NTG0939741

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: V6W80_RS18080
• Genome accession: NZ_CP145723
• Coordinates: 3787365..3789605 (-)
• Length: 746 a.a.
• NCBI ID: WP_257705475.1
• Uniprot ID: -
• Organism: Pseudomonas benzopyrenica strain MLY92
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3782365..3794605

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6W80_RS18045 (V6W80_18045)	murB	3782793..3783815 (-)	1023	WP_338545005.1	UDP-N-acetylmuramate dehydrogenase	-
V6W80_RS18050 (V6W80_18050)	-	3783805..3784272 (-)	468	WP_338547467.1	low molecular weight protein-tyrosine-phosphatase	-
V6W80_RS18055 (V6W80_18055)	kdsB	3784279..3785043 (-)	765	WP_338545006.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
V6W80_RS18060 (V6W80_18060)	-	3785040..3785225 (-)	186	WP_007162406.1	Trm112 family protein	-
V6W80_RS18065 (V6W80_18065)	lpxK	3785240..3786247 (-)	1008	WP_338545007.1	tetraacyldisaccharide 4'-kinase	-
V6W80_RS18070 (V6W80_18070)	-	3786244..3786684 (-)	441	WP_017639766.1	biopolymer transporter ExbD	-
V6W80_RS18075 (V6W80_18075)	exbB	3786681..3787316 (-)	636	WP_017639767.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
V6W80_RS18080 (V6W80_18080)	comA	3787365..3789605 (-)	2241	WP_257705475.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
V6W80_RS18085 (V6W80_18085)	-	3789711..3790952 (-)	1242	WP_257705474.1	lipoprotein-releasing ABC transporter permease subunit	-
V6W80_RS18090 (V6W80_18090)	lolD	3790960..3791661 (-)	702	WP_257705473.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
V6W80_RS18095 (V6W80_18095)	-	3791654..3792904 (-)	1251	WP_093256004.1	lipoprotein-releasing ABC transporter permease subunit	-
V6W80_RS18100 (V6W80_18100)	-	3793012..3793563 (+)	552	WP_017639771.1	PilZ domain-containing protein	-
V6W80_RS18105 (V6W80_18105)	-	3793560..3793850 (+)	291	WP_257705472.1	phosphodiesterase	-
V6W80_RS18110 (V6W80_18110)	-	3793866..3794582 (+)	717	WP_257705471.1	glycerophosphodiester phosphodiesterase family protein	-

Sequence

Protein

• Length: 746 a.a.
• Molecular weight: 79205.75 Da
• Isoelectric Point: 10.5580

>NTDB_id=939741 V6W80_RS18080 WP_257705475.1 3787365..3789605(-) (comA) [Pseudomonas benzopyrenica strain MLY92]
MRAALLSFALGVLFLRAFASLPSLPLLAALAAMALGLLLTRFLALGACGLGLAWALLNAHWALDDRLAPALEQRVLWIEG
QISGLPAVDADAVVFVLAGATSRRDLKLPARIRLNWHGGPRPLAGERWRLAAELRGPAGLVNPLGQDREAWLLAQGIGAT
GSVKDGQRLAAASGLATWRDGIRQYLQTRNPAGQGGLLAALVVGDGSGITDAQWQLFQDTGTVHLMVISGQHISLVALSV
YAGVVLLARRGLWPSRLPWRLSAAVLTIATALGYGLLAGFEVPVQRACVMVTLGLLWQLGRQQVRLADAVLLALVLVLAA
NPLVSLLTGFWLSFGAVLLLLWSFAGRLGRLPWWATLGRAQWCMAVGLAPLLLALGLPLSLSGPLANALAVPLMDLAIVP
LALVGTLLSLLWSPLGEPALWLAGGLLQGLLWVLTGLAHLAAAWQPVLAPAWTLWLAGLGALLALLPAGVPLRGLGALLM
LPGLFPPVPAPGEGLARITVLDVGQGLAVLVRTRDHALLYDAGPRQGSYDSGARVVLPNLKGTGIDTLDVMLLSHADADH
AGGALAVARGLPPGRVLSGEVGRLQPQLRARDCEDGARWEWNGVGFTTWWRPDADSNAASCVLRVEARGERLLLTGDIDA
RREAELVASGKPLAAEWLVAPHHGSRSGSSAGFIDAVQPRGVLISRGLNNRYGHPHPQVLARYRERGVLPYDTAALGALT
WTLGRWEVPRGQRQERHWWRIPPPTP

Nucleotide

• Length: 2241 bp

>NTDB_id=939741 V6W80_RS18080 WP_257705475.1 3787365..3789605(-) (comA) [Pseudomonas benzopyrenica strain MLY92]
ATGCGCGCCGCTCTGCTGTCCTTCGCCCTCGGCGTGCTGTTCCTGCGCGCCTTCGCCTCGCTGCCGTCGTTGCCGCTGCT
GGCGGCCCTCGCGGCGATGGCCCTGGGGCTGCTGCTGACCCGCTTCCTGGCCCTTGGCGCCTGCGGCCTGGGCCTGGCCT
GGGCGTTGCTCAATGCCCACTGGGCCCTGGACGATCGTCTGGCTCCGGCGCTGGAGCAGCGGGTGCTGTGGATCGAAGGC
CAGATCAGCGGCCTGCCCGCGGTGGACGCCGACGCGGTGGTCTTCGTGCTCGCCGGGGCTACCAGCCGCCGCGACCTGAA
GCTACCGGCGCGGATCCGCCTGAACTGGCACGGTGGTCCCCGTCCGCTGGCCGGCGAACGCTGGCGCCTGGCGGCGGAGT
TGCGCGGCCCCGCGGGCCTGGTCAACCCCCTGGGCCAGGATCGCGAAGCCTGGCTGCTGGCCCAGGGCATCGGCGCCACC
GGCAGCGTCAAGGATGGCCAGCGCCTGGCGGCGGCCAGTGGCCTGGCGACCTGGCGCGACGGTATCCGGCAATACCTGCA
GACCCGCAATCCGGCCGGACAGGGCGGGTTGCTGGCCGCCCTGGTGGTGGGCGATGGCTCGGGCATCACCGATGCCCAGT
GGCAGCTGTTCCAGGATACCGGCACCGTGCACCTGATGGTGATCTCCGGGCAGCACATCAGCCTGGTCGCCCTCAGCGTC
TATGCCGGGGTGGTCCTCCTGGCGCGCCGTGGTCTCTGGCCAAGCCGGTTGCCCTGGCGCCTGTCGGCCGCGGTGCTGAC
GATCGCCACCGCGTTGGGCTACGGACTGCTAGCCGGCTTCGAGGTGCCGGTACAGCGCGCCTGCGTCATGGTCACCCTGG
GGCTGCTCTGGCAACTGGGCCGCCAGCAGGTTCGCCTGGCGGACGCCGTCCTGCTGGCCCTGGTACTGGTGCTGGCGGCC
AATCCCCTGGTCAGTCTGCTGACGGGTTTCTGGCTCTCCTTTGGCGCCGTGCTGTTGCTGCTCTGGAGCTTCGCCGGCCG
TCTGGGCCGATTGCCCTGGTGGGCTACCCTCGGGCGGGCCCAGTGGTGCATGGCCGTGGGGCTGGCGCCGCTGCTCCTGG
CGCTGGGCCTGCCCCTGAGTCTGAGCGGTCCGCTGGCCAACGCCCTGGCCGTGCCGCTGATGGACCTGGCCATCGTGCCC
CTGGCGCTGGTGGGTACCCTGCTGTCGCTGCTCTGGTCGCCGCTGGGCGAGCCCGCGTTGTGGCTGGCCGGTGGGCTGTT
GCAGGGACTGCTCTGGGTGCTGACCGGGTTGGCGCATCTGGCCGCCGCCTGGCAGCCCGTATTGGCGCCTGCCTGGACGC
TGTGGCTGGCAGGACTGGGGGCGTTGCTGGCCCTGCTGCCCGCGGGCGTGCCGCTGCGCGGCCTTGGCGCGCTGCTGATG
CTGCCCGGGCTGTTTCCCCCGGTGCCTGCGCCCGGGGAAGGGCTGGCGCGGATCACCGTATTGGACGTGGGGCAGGGACT
GGCCGTGCTGGTGCGCACCCGTGACCATGCCCTGCTCTACGACGCCGGTCCGCGCCAGGGCAGCTATGACAGCGGCGCCC
GGGTCGTCCTGCCCAACCTGAAAGGCACCGGCATCGATACCCTGGATGTCATGCTGCTCAGTCATGCCGATGCCGACCAT
GCCGGCGGTGCGCTGGCCGTGGCCAGGGGGCTGCCGCCGGGCCGGGTGCTCAGTGGTGAGGTGGGTCGCCTGCAGCCGCA
ATTGCGCGCCCGGGATTGTGAAGACGGCGCCCGCTGGGAGTGGAACGGGGTCGGCTTCACCACCTGGTGGCGTCCCGATG
CGGATTCCAATGCCGCCTCCTGTGTACTCCGCGTCGAGGCCAGGGGCGAGCGCCTGCTGCTGACCGGCGATATCGATGCT
CGCCGCGAGGCGGAGTTGGTGGCCAGTGGCAAGCCCCTGGCGGCGGAGTGGCTCGTCGCCCCGCACCATGGCAGTCGCAG
TGGCTCCAGCGCCGGTTTCATCGACGCCGTCCAGCCACGCGGCGTGCTGATCTCCCGCGGGCTGAACAATCGCTATGGCC
ATCCCCATCCCCAGGTGCTGGCGCGCTATCGAGAGCGCGGCGTGCTGCCCTACGACACCGCCGCGCTAGGCGCCCTGACC
TGGACCCTCGGTCGCTGGGAGGTACCGCGTGGTCAGCGCCAGGAGCGTCACTGGTGGCGAATACCCCCGCCGACACCCTA
A

Domains

Predicted by InterproScan.

• Competence protein (Competence) (201-465)

• Domain of unknown function (DUF4131) (DUF4131) (24-168)

• Metallo-beta-lactamase superfamily (Lactamase_B) (502-716)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	56.172	96.649	0.543
comA	Ralstonia pseudosolanacearum GMI1000	35.658	100	0.363