Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   V6D45_RS19020 Genome accession   NZ_CP145722
Coordinates   3758528..3758647 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3753528..3763647
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS19000 (V6D45_19005) - 3753699..3754982 (+) 1284 WP_338443403.1 pitrilysin family protein -
  V6D45_RS19005 (V6D45_19010) - 3754979..3755680 (+) 702 WP_338443404.1 bacteriocin biosynthesis protein AlbG -
  V6D45_RS19010 (V6D45_19015) - 3755817..3757172 (-) 1356 WP_338443405.1 YncE family protein -
  V6D45_RS19015 (V6D45_19020) rapF 3757399..3758544 (+) 1146 WP_338443406.1 response regulator aspartate phosphatase RapF Regulator
  V6D45_RS19020 (V6D45_19025) phrF 3758528..3758647 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  V6D45_RS19025 (V6D45_19030) - 3758875..3759351 (+) 477 WP_015384936.1 hypothetical protein -
  V6D45_RS19030 (V6D45_19035) - 3759611..3760297 (+) 687 WP_338443408.1 hypothetical protein -
  V6D45_RS19035 (V6D45_19040) - 3761773..3762420 (+) 648 WP_129092783.1 ABC transporter ATP-binding protein -
  V6D45_RS19040 (V6D45_19045) - 3762413..3762976 (+) 564 WP_015483840.1 hypothetical protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=939715 V6D45_RS19020 WP_009968329.1 3758528..3758647(+) (phrF) [Bacillus spizizenii strain kcgeb_S11]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=939715 V6D45_RS19020 WP_009968329.1 3758528..3758647(+) (phrF) [Bacillus spizizenii strain kcgeb_S11]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487