Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   V6D45_RS17920 Genome accession   NZ_CP145722
Coordinates   3528034..3528756 (-) Length   240 a.a.
NCBI ID   WP_338443306.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3523034..3533756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS17885 (V6D45_17890) fliW 3523176..3523607 (-) 432 WP_338443301.1 flagellar assembly protein FliW -
  V6D45_RS17890 (V6D45_17895) - 3523628..3524203 (-) 576 WP_338443302.1 DUF6470 family protein -
  V6D45_RS17895 (V6D45_17900) flgL 3524251..3525147 (-) 897 WP_338443303.1 flagellar hook-associated protein FlgL -
  V6D45_RS17900 (V6D45_17905) flgK 3525157..3526680 (-) 1524 WP_338443304.1 flagellar hook-associated protein FlgK -
  V6D45_RS17905 (V6D45_17910) flgN 3526699..3527181 (-) 483 WP_014115348.1 flagellar protein FlgN -
  V6D45_RS17910 (V6D45_17915) flgM 3527196..3527462 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6D45_RS17915 (V6D45_17920) - 3527542..3527961 (-) 420 WP_338443305.1 TIGR03826 family flagellar region protein -
  V6D45_RS17920 (V6D45_17925) comFC 3528034..3528756 (-) 723 WP_338443306.1 ComF family protein Machinery gene
  V6D45_RS17925 (V6D45_17930) - 3528720..3529016 (-) 297 WP_014115352.1 competence protein ComFB -
  V6D45_RS17930 (V6D45_17935) comFA 3529085..3530467 (-) 1383 WP_338444548.1 ATP-dependent helicase ComFA Machinery gene
  V6D45_RS17935 (V6D45_17940) - 3530574..3531419 (-) 846 WP_014115354.1 DegV family protein -
  V6D45_RS17940 (V6D45_17945) degU 3531517..3532206 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V6D45_RS17945 (V6D45_17950) degS 3532289..3533446 (-) 1158 WP_338443307.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27402.84 Da        Isoelectric Point: 9.6056

>NTDB_id=939707 V6D45_RS17920 WP_338443306.1 3528034..3528756(-) (comFC) [Bacillus spizizenii strain kcgeb_S11]
MPNEAGGGIYKLICLLCDSPFFQSITWRALFLLKPEEKVCHTCRSKLKKITGHICTLCGRPQSVHAVCRDCEAWKSRVSD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSQVYPDKHFVLVPIPLSKEREKERGFNQAQLLAECL
DRPIYHPLIRLNNEKQSKKKKTERLLSARIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVASFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=939707 V6D45_RS17920 WP_338443306.1 3528034..3528756(-) (comFC) [Bacillus spizizenii strain kcgeb_S11]
ATGCCAAATGAAGCAGGAGGGGGCATTTATAAACTGATCTGTCTATTATGCGATTCACCATTTTTTCAATCTATTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGAAGAAAAGGTCTGCCATACCTGCAGAAGCAAATTGAAGAAAATCACAGGACATA
TCTGCACCCTGTGCGGCAGGCCTCAATCCGTTCATGCGGTATGCAGGGATTGCGAGGCGTGGAAATCAAGAGTCAGTGAC
AGCTTGCTGCTGCGCCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCTTTTAAAAGTGATTTTTCTTCAACCTTCTCACAGGTTTACCCCGATAAGCATTTTG
TTCTTGTTCCTATTCCGCTGAGCAAGGAACGGGAAAAAGAGCGCGGATTTAACCAGGCACAGCTCCTGGCAGAATGTTTA
GACCGGCCTATCTACCATCCCCTCATCCGCCTGAATAATGAGAAACAGTCTAAGAAAAAGAAAACAGAACGCCTGCTTTC
AGCGCGTATTTTTGATACAAAAAACAACTCAGCCGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACTTTGCATTTTGCAGCCCGCTGTTTATTAGAGAAAGGAAAAGCCGCTTCAGTGGCATCTTTTACCTTAATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

90.417

100

0.904