Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   V6D45_RS17940 Genome accession   NZ_CP145722
Coordinates   3531517..3532206 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3526517..3537206
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS17905 (V6D45_17910) flgN 3526699..3527181 (-) 483 WP_014115348.1 flagellar protein FlgN -
  V6D45_RS17910 (V6D45_17915) flgM 3527196..3527462 (-) 267 WP_014115349.1 flagellar biosynthesis anti-sigma factor FlgM -
  V6D45_RS17915 (V6D45_17920) - 3527542..3527961 (-) 420 WP_338443305.1 TIGR03826 family flagellar region protein -
  V6D45_RS17920 (V6D45_17925) comFC 3528034..3528756 (-) 723 WP_338443306.1 ComF family protein Machinery gene
  V6D45_RS17925 (V6D45_17930) - 3528720..3529016 (-) 297 WP_014115352.1 competence protein ComFB -
  V6D45_RS17930 (V6D45_17935) comFA 3529085..3530467 (-) 1383 WP_338444548.1 ATP-dependent helicase ComFA Machinery gene
  V6D45_RS17935 (V6D45_17940) - 3530574..3531419 (-) 846 WP_014115354.1 DegV family protein -
  V6D45_RS17940 (V6D45_17945) degU 3531517..3532206 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  V6D45_RS17945 (V6D45_17950) degS 3532289..3533446 (-) 1158 WP_338443307.1 two-component sensor histidine kinase DegS Regulator
  V6D45_RS17950 (V6D45_17955) - 3533662..3534315 (+) 654 WP_061186930.1 YigZ family protein -
  V6D45_RS17955 (V6D45_17960) - 3534315..3535439 (+) 1125 WP_338443308.1 LCP family protein -
  V6D45_RS17960 (V6D45_17965) - 3535522..3536598 (-) 1077 WP_061186932.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=939709 V6D45_RS17940 WP_003219701.1 3531517..3532206(-) (degU) [Bacillus spizizenii strain kcgeb_S11]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=939709 V6D45_RS17940 WP_003219701.1 3531517..3532206(-) (degU) [Bacillus spizizenii strain kcgeb_S11]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGACGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCCGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGCGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATCGAAGCGGTTAAAGTAGTTGCCGAGGGCGGTTCTTACCTTCATCCGAAGGTTACTCACA
ATCTCGTTAACGAATTCCGCCGTCTTGCAACAAGCGGAGTTTCTGCACATCCTCAGCATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACCCGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTGAGCAATATTTTGCAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1