Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   V6D45_RS12515 Genome accession   NZ_CP145722
Coordinates   2476461..2476796 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus spizizenii strain kcgeb_S11     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2471461..2481796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6D45_RS12495 (V6D45_12500) gcvT 2472050..2473138 (-) 1089 WP_338442834.1 glycine cleavage system aminomethyltransferase GcvT -
  V6D45_RS12500 (V6D45_12505) - 2473580..2475253 (+) 1674 WP_338442835.1 SNF2-related protein -
  V6D45_RS12505 (V6D45_12510) - 2475274..2476068 (+) 795 WP_268392645.1 YqhG family protein -
  V6D45_RS12510 (V6D45_12515) sinI 2476254..2476427 (+) 174 WP_338442836.1 anti-repressor SinI family protein Regulator
  V6D45_RS12515 (V6D45_12520) sinR 2476461..2476796 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  V6D45_RS12520 (V6D45_12525) tasA 2476890..2477675 (-) 786 WP_014114390.1 biofilm matrix protein TasA -
  V6D45_RS12525 (V6D45_12530) - 2477739..2478311 (-) 573 WP_338444517.1 signal peptidase I -
  V6D45_RS12530 (V6D45_12535) tapA 2478295..2479056 (-) 762 WP_338442837.1 amyloid fiber anchoring/assembly protein TapA -
  V6D45_RS12535 (V6D45_12540) - 2479326..2479652 (+) 327 WP_268393880.1 YqzG/YhdC family protein -
  V6D45_RS12540 (V6D45_12545) - 2479694..2479873 (-) 180 WP_003226330.1 YqzE family protein -
  V6D45_RS12545 (V6D45_12550) comGG 2479945..2480319 (-) 375 WP_268393879.1 competence type IV pilus minor pilin ComGG Machinery gene
  V6D45_RS12550 (V6D45_12555) comGF 2480320..2480703 (-) 384 WP_268393878.1 competence type IV pilus minor pilin ComGF Machinery gene
  V6D45_RS12555 (V6D45_12560) comGE 2480729..2481076 (-) 348 WP_268393877.1 competence type IV pilus minor pilin ComGE Machinery gene
  V6D45_RS12560 (V6D45_12565) comGD 2481060..2481491 (-) 432 Protein_2424 competence type IV pilus minor pilin ComGD -
  V6D45_RS12565 (V6D45_12570) comGC 2481481..2481777 (-) 297 WP_014114400.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=939681 V6D45_RS12515 WP_003226345.1 2476461..2476796(+) (sinR) [Bacillus spizizenii strain kcgeb_S11]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=939681 V6D45_RS12515 WP_003226345.1 2476461..2476796(+) (sinR) [Bacillus spizizenii strain kcgeb_S11]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1