Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   ACEXP4_RS28230 Genome accession   NZ_CP169522
Coordinates   5850011..5852086 (-) Length   691 a.a.
NCBI ID   WP_019682165.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain CIMT2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5845011..5857086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEXP4_RS28195 (ACEXP4_28195) - 5845179..5845580 (+) 402 WP_003098332.1 heme-binding protein -
  ACEXP4_RS28200 (ACEXP4_28200) - 5845714..5845881 (+) 168 WP_003098330.1 rubredoxin -
  ACEXP4_RS28205 (ACEXP4_28205) - 5846065..5846232 (+) 168 WP_003098329.1 rubredoxin -
  ACEXP4_RS28210 (ACEXP4_28210) alkT 5846284..5847438 (+) 1155 WP_003098326.1 rubredoxin-NAD(+) reductase AlkT -
  ACEXP4_RS28215 (ACEXP4_28215) - 5847640..5847912 (+) 273 WP_003096630.1 HU family DNA-binding protein -
  ACEXP4_RS28220 (ACEXP4_28220) - 5848048..5848440 (+) 393 WP_003096629.1 hypothetical protein -
  ACEXP4_RS28225 (ACEXP4_28225) - 5848512..5849921 (-) 1410 WP_003098324.1 HDOD domain-containing protein -
  ACEXP4_RS28230 (ACEXP4_28230) recG 5850011..5852086 (-) 2076 WP_019682165.1 ATP-dependent DNA helicase RecG Machinery gene
  ACEXP4_RS28235 (ACEXP4_28235) oxyR 5852083..5853015 (-) 933 WP_003096622.1 oxidative stress transcriptional regulator OxyR -
  ACEXP4_RS28240 (ACEXP4_28240) - 5853153..5854004 (+) 852 WP_003096618.1 SDR family oxidoreductase -
  ACEXP4_RS28245 (ACEXP4_28245) - 5854004..5854804 (+) 801 WP_003114367.1 AraC family transcriptional regulator -
  ACEXP4_RS28250 (ACEXP4_28250) - 5854871..5855491 (+) 621 WP_003096613.1 LysE family translocator -
  ACEXP4_RS28255 (ACEXP4_28255) - 5855498..5856229 (-) 732 WP_023108888.1 hypothetical protein -
  ACEXP4_RS28260 (ACEXP4_28260) - 5856284..5856664 (-) 381 WP_003096609.1 RidA family protein -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 76208.90 Da        Isoelectric Point: 7.2591

>NTDB_id=939199 ACEXP4_RS28230 WP_019682165.1 5850011..5852086(-) (recG) [Pseudomonas aeruginosa strain CIMT2]
MTELSRVPVTALKGVGAALAEKLARVGLETLQDILFHLPLRYQDRTRVTAIGALRPGADAVVEGVVAGADVVMGRRRSLL
VRLQDGSGTLSLRFYHFSQAQKDGLKRGTHLRCYGEVRPGASGLEIYHPEYRALNGDEPIPVEQTLTPIYPTTEGLTQQR
LRQLSQQALAMLGPSSLPDWLPAELARDYQLGPLDQAIRYLHRPPPDADIEELAEGRHWAQLRLAFEELLTHQLSLQRLR
EAVRSQAAPRLPAASRLPKRFLTNLGFQPTGAQRRVGAEIAYDLAQDEPMLRLVQGDVGAGKTVVAALAALQAIEAGYQV
ALMAPTEILAEQHFLNFSKWLQPLDIEVAWLAGKLKGKARAAALERIGDGAPMVVGTHALFQDEVKFKRLALAIIDEQHR
FGVQQRLALRQKGVDGRLCPHQLIMTATPIPRTLAMSAYADLDTSILDELPPGRTPVNTVLVADSRRIEVIERVRAACRE
GRQAYWVCTLIEESEELTCQAAETTYEELSSALGELRVGLIHGRMKPADKAVVMEAFKEGMLQLLVATTVIEVGVDVPNA
SLMIIENPERLGLAQLHQLRGRVGRGSAASHCVLLYHPPLSQIGRERLGIMRETSDGFVIAEKDLELRGPGEMLGTRQTG
LLQFKVADLMRDADLLPAVRDAAQSLLAHWPQHVSPLLERWLRHGQQYGQV

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=939199 ACEXP4_RS28230 WP_019682165.1 5850011..5852086(-) (recG) [Pseudomonas aeruginosa strain CIMT2]
ATGACCGAGCTGTCCAGGGTCCCGGTTACCGCGCTAAAGGGCGTAGGCGCCGCGCTGGCGGAGAAGCTCGCTCGGGTAGG
CCTGGAAACCCTGCAGGATATCCTGTTCCACCTGCCCCTGCGCTACCAGGACCGTACCCGCGTCACCGCCATCGGCGCCC
TGCGGCCAGGGGCCGACGCGGTGGTCGAGGGCGTGGTGGCCGGCGCCGACGTGGTGATGGGGCGCCGCCGCAGCCTGCTG
GTGCGCCTGCAGGACGGCAGCGGCACCCTGAGCCTGCGCTTCTACCATTTCAGCCAGGCGCAGAAGGACGGTCTCAAGCG
CGGCACCCACCTGCGCTGCTACGGCGAAGTCCGGCCGGGTGCCTCGGGCCTGGAGATCTACCATCCGGAATACCGCGCGC
TGAACGGCGACGAGCCGATTCCGGTGGAGCAGACCCTGACGCCGATCTACCCGACTACCGAGGGCCTCACCCAGCAGCGC
CTGCGCCAGTTGAGCCAACAGGCCCTGGCCATGCTCGGCCCCAGCAGCCTGCCCGACTGGCTGCCGGCGGAACTGGCCCG
CGACTACCAACTTGGCCCGCTCGACCAGGCGATCCGCTACCTGCACCGGCCGCCGCCGGATGCCGACATCGAGGAACTGG
CCGAAGGCCGGCACTGGGCGCAGTTGCGCCTGGCCTTCGAAGAACTGCTGACCCACCAGTTATCCCTGCAGCGCCTGCGC
GAAGCCGTGCGCTCGCAGGCAGCGCCGCGCTTGCCGGCGGCCAGCCGCTTGCCGAAACGCTTCCTTACCAACCTCGGCTT
CCAGCCGACCGGCGCGCAACGCCGGGTCGGCGCGGAGATCGCCTACGACCTGGCCCAGGACGAGCCGATGCTGCGCCTGG
TGCAAGGCGACGTCGGTGCCGGCAAGACCGTGGTCGCCGCCCTCGCCGCCCTGCAAGCCATAGAGGCCGGCTACCAGGTG
GCGCTGATGGCGCCGACCGAGATCCTCGCCGAGCAGCATTTCCTCAACTTCAGCAAGTGGCTCCAGCCGCTGGACATCGA
AGTCGCCTGGCTGGCCGGCAAGCTCAAGGGCAAGGCCCGCGCGGCGGCACTGGAACGCATCGGCGACGGCGCGCCGATGG
TGGTCGGCACCCACGCGCTGTTCCAGGATGAAGTGAAATTCAAGCGCCTTGCACTGGCGATCATCGACGAACAGCACCGC
TTCGGCGTGCAGCAGCGCCTGGCCCTGCGCCAGAAGGGCGTGGACGGCAGGCTCTGCCCACACCAGTTGATCATGACCGC
CACGCCGATCCCGCGGACCCTGGCGATGAGCGCCTATGCCGACCTCGACACCTCGATCCTCGACGAGCTGCCGCCCGGGC
GTACCCCGGTGAATACCGTGCTGGTGGCCGACAGCCGCCGTATCGAGGTGATCGAGCGAGTCCGCGCGGCTTGCCGCGAA
GGGCGCCAGGCCTACTGGGTGTGTACCCTGATCGAAGAGTCCGAGGAGCTTACCTGCCAGGCCGCCGAGACCACCTACGA
AGAGCTTTCCTCGGCGCTGGGCGAACTGCGTGTCGGCCTGATCCACGGGCGCATGAAGCCGGCGGACAAGGCCGTGGTGA
TGGAGGCCTTCAAGGAAGGCATGTTGCAACTGCTGGTGGCGACCACGGTGATCGAGGTCGGCGTCGACGTGCCCAACGCC
AGCCTGATGATCATCGAGAACCCCGAGCGCCTTGGCCTGGCCCAACTGCACCAGCTACGCGGCCGGGTTGGCCGGGGCAG
CGCCGCCAGCCACTGCGTGCTGCTCTACCACCCACCGCTGTCGCAGATCGGCCGCGAGCGGCTGGGCATCATGCGCGAAA
CCAGCGACGGCTTCGTCATCGCCGAGAAGGACCTGGAATTGCGCGGCCCCGGCGAAATGCTCGGCACCCGCCAGACCGGC
CTGCTGCAATTCAAGGTCGCCGACCTGATGCGCGACGCAGACCTGCTGCCGGCGGTCCGCGATGCCGCCCAATCCCTCCT
GGCGCACTGGCCGCAGCATGTCAGCCCGCTGCTCGAACGGTGGTTGCGCCACGGCCAGCAATACGGTCAAGTGTGA

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(293-430)

Helicase conserved C-terminal domain (Helicase_C)

(479-586)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(614-675)

RecG wedge domain (RecG_wedge)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.373

97.106

0.489
  recG/mmsA Streptococcus pneumoniae R6

40.719

96.671

0.394
  recG/mmsA Streptococcus pneumoniae R36A

40.719

96.671

0.394
  recG Bacillus subtilis subsp. subtilis str. 168

40.356

97.54

0.394