Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   V6S17_RS12440 Genome accession   NZ_CP145608
Coordinates   2522748..2523287 (-) Length   179 a.a.
NCBI ID   WP_029091941.1    Uniprot ID   -
Organism   Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2517748..2528287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S17_RS12420 (V6S17_12420) - 2518194..2520173 (-) 1980 WP_029091938.1 DHH family phosphoesterase -
  V6S17_RS12425 (V6S17_12425) - 2520525..2521529 (+) 1005 WP_080712942.1 YitT family protein -
  V6S17_RS12430 (V6S17_12430) - 2521546..2522322 (+) 777 WP_029091939.1 DUF2785 domain-containing protein -
  V6S17_RS12435 (V6S17_12435) rpsR 2522482..2522721 (-) 240 WP_029091940.1 30S ribosomal protein S18 -
  V6S17_RS12440 (V6S17_12440) ssbA 2522748..2523287 (-) 540 WP_029091941.1 single-stranded DNA-binding protein Machinery gene
  V6S17_RS12445 (V6S17_12445) rpsF 2523328..2523618 (-) 291 WP_029091942.1 30S ribosomal protein S6 -
  V6S17_RS12450 (V6S17_12450) - 2523815..2524438 (-) 624 WP_029091943.1 response regulator transcription factor -
  V6S17_RS12455 (V6S17_12455) - 2526121..2527359 (-) 1239 WP_029091974.1 restriction endonuclease subunit S -

Sequence

Protein


Download         Length: 179 a.a.        Molecular weight: 19361.99 Da        Isoelectric Point: 4.9222

>NTDB_id=939057 V6S17_RS12440 WP_029091941.1 2522748..2523287(-) (ssbA) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
MMNRVVLVGRLTKDPELRYTPAGAAVATFTLAVNRTFTNQQGDREADFVNCVVWRKAAENVANFLKKGSLAGVDGRLQTR
NYEANDGRRVYVTEVVAESVQFLEPRNANAGNSGASGSNQGGNNYNDDSSSYNGGNQQPQSNQGNAYNQNSQQSSKPAFS
NPFASDGKPIDISDDDLPF

Nucleotide


Download         Length: 540 bp        

>NTDB_id=939057 V6S17_RS12440 WP_029091941.1 2522748..2523287(-) (ssbA) [Brochothrix thermosphacta DSM 20171 = FSL F6-1036 strain DSM 20171]
ATGATGAATCGTGTTGTTCTAGTGGGTCGTTTAACTAAGGATCCAGAACTTCGCTACACACCAGCTGGTGCTGCTGTAGC
CACGTTTACACTAGCTGTAAATCGTACGTTTACGAATCAACAAGGGGATCGAGAAGCTGACTTTGTTAACTGTGTCGTTT
GGCGTAAGGCGGCTGAAAACGTAGCTAATTTCTTGAAAAAAGGAAGTTTAGCTGGTGTTGATGGTCGTTTACAAACGCGT
AATTACGAAGCAAATGATGGTCGTCGCGTTTATGTAACTGAAGTGGTCGCTGAGAGTGTTCAATTTTTAGAGCCGCGTAA
TGCTAACGCAGGAAATTCAGGTGCGAGTGGAAGCAATCAAGGCGGCAACAATTATAATGACGATAGTAGTTCTTATAATG
GTGGAAATCAACAGCCACAATCAAATCAAGGAAATGCGTATAATCAAAACAGTCAACAATCGAGTAAGCCTGCTTTCAGC
AACCCGTTTGCTAGTGATGGCAAGCCAATCGATATTTCTGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

68.085

100

0.715
  ssb Latilactobacillus sakei subsp. sakei 23K

58.659

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

59.218

0.38