Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ACEY2B_RS00425 Genome accession   NZ_CP169315
Coordinates   80275..80868 (+) Length   197 a.a.
NCBI ID   WP_374788125.1    Uniprot ID   -
Organism   Lactococcus lactis strain IFLLLBEK1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 75275..85868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEY2B_RS00415 (ACEY2B_00415) - 77368..78063 (+) 696 WP_010906384.1 hypothetical protein -
  ACEY2B_RS00420 (ACEY2B_00420) hexB 78192..80162 (+) 1971 WP_042230802.1 DNA mismatch repair endonuclease MutL Machinery gene
  ACEY2B_RS00425 (ACEY2B_00425) ruvA 80275..80868 (+) 594 WP_374788125.1 Holliday junction branch migration protein RuvA Machinery gene
  ACEY2B_RS00430 (ACEY2B_00430) ruvB 80995..81996 (+) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ACEY2B_RS00435 (ACEY2B_00435) - 82132..83016 (+) 885 WP_015427217.1 XRE/MutR family transcriptional regulator -
  ACEY2B_RS00440 (ACEY2B_00440) - 83235..83804 (+) 570 WP_015427216.1 hypothetical protein -
  ACEY2B_RS00445 (ACEY2B_00445) - 84109..85227 (+) 1119 WP_374788126.1 ABC transporter permease -
  ACEY2B_RS00450 (ACEY2B_00450) - 85224..85820 (+) 597 WP_015427214.1 AAA family ATPase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21210.74 Da        Isoelectric Point: 5.3247

>NTDB_id=938964 ACEY2B_RS00425 WP_374788125.1 80275..80868(+) (ruvA) [Lactococcus lactis strain IFLLLBEK1]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEDEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLDAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=938964 ACEY2B_RS00425 WP_374788125.1 80275..80868(+) (ruvA) [Lactococcus lactis strain IFLLLBEK1]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGCTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCGGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGTG
AAGATGCCCACAGTCTCTATGGTTTTGTTAACGAAGACGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACAGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGATGCTGGACCTGCTGGCAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-196)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.606

100

0.609
  ruvA Streptococcus pneumoniae R6

60.606

100

0.609
  ruvA Streptococcus pneumoniae D39

60.606

100

0.609
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462