Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V6L78_RS16080 Genome accession   NZ_CP145491
Coordinates   3433136..3435361 (+) Length   741 a.a.
NCBI ID   WP_338567383.1    Uniprot ID   -
Organism   Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3428136..3440361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L78_RS16065 (V6L78_16065) - 3430403..3431131 (+) 729 WP_122728986.1 response regulator transcription factor -
  V6L78_RS16070 (V6L78_16070) - 3431118..3432488 (+) 1371 WP_338567380.1 sensor histidine kinase -
  V6L78_RS16075 (V6L78_16075) - 3432485..3433000 (-) 516 WP_012724913.1 DUF2062 domain-containing protein -
  V6L78_RS16080 (V6L78_16080) comA 3433136..3435361 (+) 2226 WP_338567383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6L78_RS16085 (V6L78_16085) exbB 3435435..3436070 (+) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6L78_RS16090 (V6L78_16090) - 3436067..3436495 (+) 429 WP_010209650.1 biopolymer transporter ExbD -
  V6L78_RS16095 (V6L78_16095) lpxK 3436495..3437505 (+) 1011 WP_338567385.1 tetraacyldisaccharide 4'-kinase -
  V6L78_RS16100 (V6L78_16100) - 3437530..3437715 (+) 186 WP_003174668.1 Trm112 family protein -
  V6L78_RS16105 (V6L78_16105) kdsB 3437712..3438476 (+) 765 WP_338567387.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6L78_RS16110 (V6L78_16110) - 3438476..3438940 (+) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  V6L78_RS16115 (V6L78_16115) murB 3438937..3439956 (+) 1020 WP_338567389.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 741 a.a.        Molecular weight: 80577.46 Da        Isoelectric Point: 10.4388

>NTDB_id=938817 V6L78_RS16080 WP_338567383.1 3433136..3435361(+) (comA) [Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4]
MRTGMCAFALGMLALRFLPALPTTGWLIALLVLALMLLPFRTYPLAFFLLGLSWACMSAQWALDDRLKPVLDGQTRWVEG
RVSGLPQQTDEGVRFVLTDSRSRNARLPTRIRVSWRGGPPVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRIGATG
TVKDGERLSPAANAWRDSVRQRLLAVDAQGREAGLIALVLGDGSGLAAADWQVLQDTGTVHLLVISGQHIGLLAGLIYGL
IAGLARYGCWPRTWPWLPWACGLAFTTALGYGLLAGFGVPVQRACVMVGLVLLWRLRLRHLGLWWPLLLALNGVLVLEPL
ASLQPGFWLSFAAVAVLILAFGGRLGPWSLWQVWTRPQWLIAIGLFPALLVLGLPISLSAPFANLVAVPWISLVVLPLAL
LGTALLALPFVGEGLLWLAGGALGALFNGLAWLAGQMPAWIPADVPLGYWWVSLLGAVLLLLPKGVPFRVLGWPMFLLAV
FPPRSLVPDGQVEVTQLDVGQGQSLILRTRHHTLLYDAGPRSGTFDLGARVVLPSLRKLGVGELDMLLLSHADADHAGGA
AAIANGMPIKRVVGGETDGLPPSLGTQPCFSGERWTWDGVVFELWQWPDAISGNAKSCVLQVQANGERLLLTGDIDRAAE
QAMLASPLAVPTDWLQAPHHGSRSSSSWPFVERLAPRSVLISRGRNNAFGHPHPQVMERYQRLGSQVYDSAEQGAVRLQL
GAFAPPVVARSQRRFWRERLP

Nucleotide


Download         Length: 2226 bp        

>NTDB_id=938817 V6L78_RS16080 WP_338567383.1 3433136..3435361(+) (comA) [Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4]
ATGAGGACAGGGATGTGCGCGTTTGCGCTGGGGATGCTGGCCTTGCGCTTTTTACCGGCATTGCCGACGACTGGTTGGCT
GATCGCCTTGCTGGTGCTGGCCCTGATGCTGTTGCCATTTCGCACGTATCCCTTGGCTTTTTTCCTGTTGGGGCTGAGTT
GGGCGTGCATGAGTGCGCAGTGGGCGCTGGATGATCGCCTCAAGCCAGTGCTGGACGGTCAGACGCGCTGGGTGGAAGGG
CGGGTCAGCGGGCTGCCGCAACAGACGGACGAGGGTGTGCGCTTTGTCCTGACCGACAGTCGGTCGCGTAATGCCCGGTT
GCCCACGCGCATCCGGGTGTCCTGGCGTGGCGGGCCGCCCGTGCGCAGCGGTGAACGCTGGCGCCTGGCCGTCACCCTCA
AGCGGCCCGCCGGGTTGCTGAACTTCCACGGCTTTGATCAGGAGGCTTGGCTGCTGGCCCAGCGCATTGGCGCTACGGGC
ACGGTAAAGGATGGAGAGCGCCTGTCACCGGCTGCCAACGCCTGGCGCGACAGTGTGCGTCAGCGCTTGCTTGCGGTGGA
CGCCCAAGGCCGGGAGGCTGGCCTGATTGCCCTGGTGTTGGGCGATGGCTCTGGATTGGCGGCTGCTGATTGGCAGGTGC
TGCAGGACACAGGGACTGTGCATTTGCTGGTCATCTCCGGCCAGCATATCGGCCTGCTGGCGGGGTTGATTTACGGATTG
ATCGCTGGCTTGGCGCGCTATGGATGCTGGCCTCGAACCTGGCCATGGCTGCCCTGGGCTTGTGGGCTGGCGTTCACTAC
GGCACTGGGTTACGGCTTGCTGGCTGGGTTTGGCGTGCCGGTGCAGCGCGCCTGCGTGATGGTTGGGCTGGTGTTGTTGT
GGCGATTGCGCTTGCGTCACCTGGGGCTGTGGTGGCCTTTGTTGCTGGCGCTCAACGGGGTGTTGGTCCTGGAGCCGTTG
GCCAGCTTGCAGCCGGGGTTCTGGCTGTCCTTTGCGGCGGTGGCGGTGCTGATCCTGGCGTTTGGTGGCCGTCTGGGACC
CTGGAGCCTGTGGCAGGTGTGGACTCGGCCGCAGTGGTTGATTGCCATCGGGTTGTTTCCGGCCTTGCTGGTGTTGGGGT
TGCCCATTAGCCTGAGTGCGCCGTTTGCCAACCTGGTGGCGGTGCCATGGATCAGCCTGGTGGTGTTGCCGCTGGCCTTG
TTGGGCACTGCATTGCTGGCGTTGCCGTTTGTAGGGGAAGGTCTGCTGTGGCTGGCGGGCGGGGCACTGGGTGCCTTGTT
CAACGGCTTGGCGTGGCTCGCCGGACAGATGCCGGCCTGGATTCCGGCCGATGTACCGCTGGGGTATTGGTGGGTAAGTC
TGCTGGGCGCAGTGCTGCTCCTGCTGCCCAAGGGCGTGCCGTTTCGTGTGTTGGGTTGGCCGATGTTTCTGCTGGCGGTG
TTTCCCCCACGATCGCTGGTGCCCGACGGACAGGTGGAGGTGACGCAGCTTGATGTCGGCCAAGGGCAATCGTTGATTTT
GCGCACCCGTCATCACACGTTGCTCTACGACGCCGGCCCGCGTTCCGGCACGTTCGACTTGGGTGCGCGCGTGGTACTGC
CGTCTTTACGAAAGCTCGGGGTAGGAGAGCTGGATATGCTGCTGCTCAGCCACGCCGATGCCGATCACGCCGGGGGTGCA
GCGGCGATTGCCAATGGCATGCCGATCAAGCGTGTGGTGGGCGGAGAAACCGACGGTTTGCCGCCATCGCTCGGCACTCA
ACCCTGCTTCAGTGGCGAGCGCTGGACTTGGGACGGTGTGGTCTTCGAACTCTGGCAGTGGCCGGACGCCATAAGTGGCA
ACGCGAAGTCCTGCGTCTTGCAGGTGCAGGCGAATGGCGAGCGCTTGCTGCTGACCGGTGATATTGACCGTGCGGCGGAA
CAGGCCATGCTTGCGTCACCGCTGGCGGTGCCCACCGATTGGCTGCAAGCGCCGCACCATGGCAGTCGCAGTTCTTCGTC
CTGGCCCTTTGTGGAACGGCTTGCTCCGCGATCCGTGCTGATCTCGCGAGGGCGCAACAATGCGTTCGGCCATCCCCATC
CACAGGTGATGGAGCGCTACCAGCGGTTGGGCAGCCAGGTATATGACAGCGCCGAGCAGGGCGCCGTACGTCTGCAGTTG
GGTGCTTTTGCGCCCCCGGTAGTTGCGCGCAGTCAACGCCGGTTCTGGCGCGAGCGGTTACCCTAG

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-664)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.417

97.166

0.587
  comA Ralstonia pseudosolanacearum GMI1000

34.62

100

0.375