Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V6L78_RS16085 Genome accession   NZ_CP145491
Coordinates   3435435..3436070 (+) Length   211 a.a.
NCBI ID   WP_016978182.1    Uniprot ID   A0A223VS35
Organism   Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3430435..3441070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6L78_RS16070 (V6L78_16070) - 3431118..3432488 (+) 1371 WP_338567380.1 sensor histidine kinase -
  V6L78_RS16075 (V6L78_16075) - 3432485..3433000 (-) 516 WP_012724913.1 DUF2062 domain-containing protein -
  V6L78_RS16080 (V6L78_16080) comA 3433136..3435361 (+) 2226 WP_338567383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V6L78_RS16085 (V6L78_16085) exbB 3435435..3436070 (+) 636 WP_016978182.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V6L78_RS16090 (V6L78_16090) - 3436067..3436495 (+) 429 WP_010209650.1 biopolymer transporter ExbD -
  V6L78_RS16095 (V6L78_16095) lpxK 3436495..3437505 (+) 1011 WP_338567385.1 tetraacyldisaccharide 4'-kinase -
  V6L78_RS16100 (V6L78_16100) - 3437530..3437715 (+) 186 WP_003174668.1 Trm112 family protein -
  V6L78_RS16105 (V6L78_16105) kdsB 3437712..3438476 (+) 765 WP_338567387.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V6L78_RS16110 (V6L78_16110) - 3438476..3438940 (+) 465 WP_010209653.1 low molecular weight protein-tyrosine-phosphatase -
  V6L78_RS16115 (V6L78_16115) murB 3438937..3439956 (+) 1020 WP_338567389.1 UDP-N-acetylmuramate dehydrogenase -
  V6L78_RS16120 (V6L78_16120) - 3440019..3440690 (-) 672 WP_016977342.1 Bax inhibitor-1/YccA family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22889.05 Da        Isoelectric Point: 7.3615

>NTDB_id=938818 V6L78_RS16085 WP_016978182.1 3435435..3436070(+) (exbB) [Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4]
MWELVKSGGWMMLPIIMSSIAALGIVAERLWTLRASRVTPEHLLGQVWSWIKNKQLDKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLVGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=938818 V6L78_RS16085 WP_016978182.1 3435435..3436070(+) (exbB) [Pseudomonas canadensis strain S2_P1_E7 isolate S2-2023-4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATCATGAGTTCTATCGCCGCACTCGGCATCGTCGC
CGAACGCCTGTGGACCCTTCGCGCCAGCCGCGTGACCCCCGAGCATTTGCTGGGGCAGGTGTGGTCCTGGATCAAGAACA
AGCAGCTCGATAAGGAAAAACTCAAGGAGCTGCGCGCCAATTCCCCGTTGGGTGAGATCCTCGCTGCCGGGCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAAGAGTGCATCGAGGAAGCCGCCGCCCGCGTCATCCATGAACTGGAACGCTACAT
CAACGCCCTCGGCACCATCGCCGCCATGGCACCGTTGCTCGGCTTGCTCGGTACAGTGTTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCTCCGGCATGACCACCAACGCGGCCGTACTGGCCGGTGGTATCTCCAAGGCGCTGATCACCACGGCC
GCAGGCCTGATGGTGGGTATTCCCTCGGTGTTCTTCCACCGCTTCCTGCAACGCCGCATCGATGAGCTTGTGGTGGGCAT
GGAGCAGGAAGCCATCAAACTGGTGGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGGTTGGGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223VS35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.834

100

0.848