Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LBA42_RS09010 Genome accession   NZ_CP145437
Coordinates   1757752..1758462 (-) Length   236 a.a.
NCBI ID   WP_000760673.1    Uniprot ID   A0A062WVH4
Organism   Streptococcus pneumoniae strain HAC 39-1996     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1752752..1763462
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBA42_RS08990 (LBA42_08990) amiF 1753660..1754586 (+) 927 WP_001291294.1 ATP-binding cassette domain-containing protein Regulator
  LBA42_RS08995 (LBA42_08995) - 1755077..1756014 (+) 938 Protein_1727 ABC transporter substrate-binding protein -
  LBA42_RS09000 (LBA42_09000) - 1756026..1756903 (+) 878 Protein_1728 ABC transporter permease -
  LBA42_RS09005 (LBA42_09005) - 1756916..1757719 (+) 804 WP_000157672.1 ATP-binding cassette domain-containing protein -
  LBA42_RS09010 (LBA42_09010) treR 1757752..1758462 (-) 711 WP_000760673.1 trehalose operon repressor Regulator
  LBA42_RS09015 (LBA42_09015) treP 1758647..1760614 (+) 1968 WP_000514304.1 PTS system trehalose-specific EIIBC component -
  LBA42_RS09020 (LBA42_09020) treC 1760792..1762417 (+) 1626 WP_000171211.1 alpha,alpha-phosphotrehalase -
  LBA42_RS09025 (LBA42_09025) - 1762559..1762807 (+) 249 WP_000364990.1 YneF family protein -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27607.78 Da        Isoelectric Point: 8.9698

>NTDB_id=938741 LBA42_RS09010 WP_000760673.1 1757752..1758462(-) (treR) [Streptococcus pneumoniae strain HAC 39-1996]
MKKYQQLFKQIQETIQNETYAVGDFLPSEHDLMEQYQVSRDTVRKALSLLQEEGLIKKIRGQGSQVVKEETVNFPVSNLT
SYQELVKELGLRSKTNVVSLDKIIIDKKSSLITGFPEFRMVWKVVRQRVVDDLVSVLDTDYLDMELIPNLTRQIAEQSIY
SYIENGLKLLIDYAQKEITIDHSSDRDKILMDIGKDPYVVSIKSKVYLQDGRQFQFTESRHKLEKFRFVDFAKRKK

Nucleotide


Download         Length: 711 bp        

>NTDB_id=938741 LBA42_RS09010 WP_000760673.1 1757752..1758462(-) (treR) [Streptococcus pneumoniae strain HAC 39-1996]
ATGAAGAAATACCAACAATTATTTAAGCAAATCCAAGAAACCATTCAAAACGAGACTTACGCTGTCGGAGATTTCCTTCC
TAGCGAGCACGACCTTATGGAGCAATATCAAGTGAGTCGTGATACCGTCCGAAAGGCCCTGTCTCTCCTCCAAGAGGAAG
GATTGATCAAAAAGATAAGAGGGCAAGGTTCTCAAGTCGTCAAAGAAGAAACCGTCAATTTCCCTGTATCCAACCTAACC
AGCTACCAAGAACTAGTTAAAGAACTTGGACTGCGCTCTAAAACCAACGTGGTCAGTCTGGACAAGATTATTATTGATAA
AAAATCCTCACTGATAACCGGTTTCCCAGAGTTTCGGATGGTTTGGAAGGTGGTCCGCCAGCGTGTGGTGGATGATCTGG
TATCCGTTCTGGATACAGACTATCTGGATATGGAACTCATCCCAAATCTCACTCGCCAAATTGCTGAGCAGTCTATCTAT
TCTTATATAGAAAATGGCCTCAAACTCCTTATTGATTATGCTCAGAAGGAAATCACCATTGACCACTCAAGCGACCGAGA
CAAGATTCTCATGGACATTGGCAAAGACCCTTATGTCGTTTCGATTAAATCAAAAGTCTATCTCCAAGACGGGCGCCAAT
TTCAGTTTACCGAAAGTCGCCATAAGTTAGAAAAATTTAGATTTGTAGATTTTGCAAAACGCAAGAAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(89-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A062WVH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

59.322

100

0.593