Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   R9A00_RS05305 Genome accession   NZ_AP028376
Coordinates   1016482..1017033 (+) Length   183 a.a.
NCBI ID   WP_317729308.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10927     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1011482..1022033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R9A00_RS05270 (B10927_10320) - 1011671..1012096 (+) 426 WP_002874957.1 GNAT family N-acetyltransferase -
  R9A00_RS05275 - 1012161..1012781 (+) 621 Protein_1014 NAD(P)H-dependent oxidoreductase -
  R9A00_RS05280 (B10927_10350) - 1012781..1013386 (+) 606 WP_002874954.1 NAD(P)H-dependent oxidoreductase -
  R9A00_RS05285 (B10927_10360) pgsA 1013511..1014047 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  R9A00_RS05290 (B10927_10370) rseP 1014044..1015150 (+) 1107 WP_317729306.1 RIP metalloprotease RseP -
  R9A00_RS05295 (B10927_10380) - 1015143..1016009 (+) 867 WP_317729307.1 VirK family antimicrobial peptide resistance protein -
  R9A00_RS05300 (B10927_10390) rpsF 1016096..1016473 (+) 378 WP_002853062.1 30S ribosomal protein S6 -
  R9A00_RS05305 (B10927_10400) ssb 1016482..1017033 (+) 552 WP_317729308.1 single-stranded DNA-binding protein Machinery gene
  R9A00_RS05310 (B10927_10410) rpsR 1017044..1017304 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  R9A00_RS05315 (B10927_10420) lon 1017365..1019740 (-) 2376 WP_317729309.1 endopeptidase La -
  R9A00_RS05320 (B10927_10430) - 1019757..1020404 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  R9A00_RS05325 (B10927_10440) fliW 1020565..1020954 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  R9A00_RS05330 (B10927_10450) proC 1020954..1021685 (+) 732 WP_060816226.1 pyrroline-5-carboxylate reductase Machinery gene
  R9A00_RS05335 (B10927_10460) ctsT 1021682..1021984 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20726.60 Da        Isoelectric Point: 5.0431

>NTDB_id=93862 R9A00_RS05305 WP_317729308.1 1016482..1017033(+) (ssb) [Campylobacter jejuni strain BCH-10927]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTANGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKANPAPQRNQNP
QHEEKLKEIDIDSYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=93862 R9A00_RS05305 WP_317729308.1 1016482..1017033(+) (ssb) [Campylobacter jejuni strain BCH-10927]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGTGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCCGCTATAGCAGTAACAAGAAGATTTACCGCAAATGGAGAAAAAAGAGAAGAAACTTGCTTTATTGATATAAGCT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAGCAAACCCTGCTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATTCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.503

100

0.393
  ssb Vibrio cholerae strain A1552

37.288

96.721

0.361

Multiple sequence alignment