Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SNR28_RS10545 Genome accession   NZ_CP145311
Coordinates   229139..229771 (-) Length   210 a.a.
NCBI ID   WP_004410522.1    Uniprot ID   A0A240EMA6
Organism   Vibrio sp. HN007     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 224139..234771
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNR28_RS10520 (SNR28_10510) - 224260..224520 (-) 261 WP_375752308.1 DUF3624 domain-containing protein -
  SNR28_RS10525 (SNR28_10515) - 224694..224984 (+) 291 WP_004733324.1 co-chaperone GroES -
  SNR28_RS10530 (SNR28_10520) groL 225045..226691 (+) 1647 WP_277825338.1 chaperonin GroEL -
  SNR28_RS10535 (SNR28_10525) - 227117..227956 (+) 840 WP_375752311.1 isopenicillin N synthase family dioxygenase -
  SNR28_RS10540 (SNR28_10530) - 228146..228829 (-) 684 WP_375752312.1 DNA-3-methyladenine glycosylase I -
  SNR28_RS10545 (SNR28_10535) crp 229139..229771 (-) 633 WP_004410522.1 cAMP-activated global transcriptional regulator CRP Regulator
  SNR28_RS10550 (SNR28_10540) - 230015..230884 (-) 870 WP_375752314.1 phosphoribulokinase -
  SNR28_RS10555 (SNR28_10545) - 230970..231185 (-) 216 WP_375752315.1 YheU family protein -
  SNR28_RS10560 (SNR28_10550) - 231228..232199 (-) 972 WP_375752316.1 hydrolase -
  SNR28_RS10565 (SNR28_10555) - 232196..233587 (-) 1392 WP_375752317.1 PLP-dependent aminotransferase family protein -
  SNR28_RS10570 (SNR28_10560) - 233716..234312 (+) 597 WP_375752318.1 LysE family translocator -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23596.37 Da        Isoelectric Point: 7.4009

>NTDB_id=938399 SNR28_RS10545 WP_004410522.1 229139..229771(-) (crp) [Vibrio sp. HN007]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=938399 SNR28_RS10545 WP_004410522.1 229139..229771(-) (crp) [Vibrio sp. HN007]
ATGGTTCTAGGTAAACCTCAAACCGATCCAACGTTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCCGAAACTCTTTACTACATTGTTAAAGGTTCTGTTGCTGTCCTAATCAAGG
ATGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGATTTTATTGGTGAACTAGGTCTGTTCGAAGAAGAC
CAGGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTTGCAGAGATTTCATTTAAGAAGTTCCGTCAGCTAAT
TCAGGTAAACCCAGATATCCTAATGCGTCTTTCAGCTCAGATGGCAAGTCGTCTGCAGGTGACAAGCCAGAAAGTTGGTG
ACTTGGCATTCCTTGATGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTGGCTAAGCAGCCAGATGCGATGACTCAC
CCAGACGGTATGCAAATTAAGATCACTCGTCAGGAAATTGGTCAGATCGTGGGTTGTTCACGTGAGACTGTGGGTCGTAT
CCTGAAGATGCTTGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A240EMA6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467