Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   D5261_RS07930 Genome accession   NZ_AP025739
Coordinates   1866485..1867504 (+) Length   339 a.a.
NCBI ID   WP_245992599.1    Uniprot ID   A0A402CZ83
Organism   Capsulimonas corticalis strain AX-7     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861485..1872504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D5261_RS07910 (CCAX7_15320) - 1862271..1863173 (-) 903 WP_119322635.1 nucleoside hydrolase -
  D5261_RS07915 (CCAX7_15330) - 1863292..1863891 (+) 600 WP_119322634.1 PadR family transcriptional regulator -
  D5261_RS07920 (CCAX7_15340) - 1863898..1865649 (+) 1752 WP_119322633.1 ABC transporter ATP-binding protein -
  D5261_RS07925 (CCAX7_15350) - 1865636..1866457 (+) 822 WP_218025655.1 ABC transporter ATP-binding protein -
  D5261_RS07930 (CCAX7_15360) rcrQ 1866485..1867504 (+) 1020 WP_245992599.1 ABC transporter ATP-binding protein Regulator
  D5261_RS07935 (CCAX7_15370) - 1867756..1868181 (+) 426 WP_119322632.1 hypothetical protein -
  D5261_RS07940 (CCAX7_15380) - 1868261..1869055 (-) 795 WP_119322631.1 DUF1559 domain-containing protein -
  D5261_RS07945 (CCAX7_15390) - 1869409..1871298 (-) 1890 WP_119322630.1 hypothetical protein -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 36891.19 Da        Isoelectric Point: 6.1489

>NTDB_id=93839 D5261_RS07930 WP_245992599.1 1866485..1867504(+) (rcrQ) [Capsulimonas corticalis strain AX-7]
MNFVSNLGLAIVAGVGGVLAVRGAITVGAIATFINYTRQFGRPLNDIANLYNSIQSAMAGAERVFEIIDEPMEVDAPDAR
PLAQIQGEVVFDDVSFSYVPGAPVLKNVSLDARPGQVIALIGPTGAGKTTIVNLLTRFYEIDSGRITIDGQDIRKIKKED
LRRQLGIVLQDTFLFTGTVRDNIKYGRLEATNDEVTAAAKLANADVFIRRLPGAYDTVLSERGGNLSQGQRQLLAIARAI
LADPRILILDEATSSVDTRTEKHIQEAMLRLMHGRTSFVIAHRLSTIREADQILVINRGEIIERGNHVELVAQNGFYARL
SANQFQATADDAPPVSLVK

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=93839 D5261_RS07930 WP_245992599.1 1866485..1867504(+) (rcrQ) [Capsulimonas corticalis strain AX-7]
ATGAACTTCGTCAGCAACCTCGGCTTGGCGATCGTCGCGGGCGTCGGCGGCGTCCTCGCCGTGCGCGGCGCGATTACCGT
CGGCGCGATCGCGACATTCATCAATTACACCCGCCAGTTCGGGCGGCCCCTCAACGATATCGCGAACCTGTACAACTCGA
TCCAATCCGCGATGGCGGGCGCCGAGCGCGTCTTTGAGATCATCGATGAACCCATGGAAGTCGACGCGCCCGACGCCCGC
CCGCTCGCCCAGATCCAGGGCGAAGTCGTGTTCGACGACGTCAGTTTCTCCTATGTCCCCGGCGCGCCCGTCCTGAAGAA
CGTCTCCCTGGATGCGCGGCCGGGCCAGGTCATCGCGCTGATCGGACCGACCGGCGCCGGCAAGACGACGATCGTCAACC
TGCTGACCCGCTTCTATGAGATCGATTCCGGACGCATTACGATCGACGGTCAGGATATCCGCAAAATCAAAAAAGAGGAC
CTGCGCCGCCAGCTCGGCATCGTCCTGCAAGATACGTTTCTCTTCACCGGGACCGTCCGCGACAACATCAAATACGGCCG
CCTGGAAGCCACGAACGACGAAGTGACGGCGGCGGCGAAGCTCGCCAACGCCGACGTCTTTATCCGCCGCCTGCCCGGCG
CCTACGACACCGTGCTGTCCGAGCGAGGCGGCAATCTCAGCCAGGGCCAGCGCCAGCTTCTCGCCATCGCCCGCGCGATC
CTCGCCGATCCGCGCATCCTGATCCTCGACGAAGCCACCAGCAGCGTCGACACCCGCACCGAGAAGCACATCCAGGAGGC
GATGCTGCGACTCATGCATGGCCGCACCAGCTTCGTCATCGCCCACCGCCTGAGCACGATCCGGGAAGCGGACCAGATCC
TCGTGATCAACCGGGGCGAGATCATCGAGCGCGGGAACCACGTCGAGCTGGTGGCGCAAAACGGATTCTACGCACGCCTC
AGCGCCAACCAGTTCCAGGCTACGGCCGATGACGCGCCGCCCGTCTCGCTCGTCAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(105-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A402CZ83

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.534

96.165

0.496

Multiple sequence alignment