Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   V6C80_RS04390 Genome accession   NZ_CP145258
Coordinates   930047..930676 (+) Length   209 a.a.
NCBI ID   WP_002469716.1    Uniprot ID   -
Organism   Staphylococcus capitis subsp. urealyticus strain DSM 6717     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 925047..935676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C80_RS04360 (V6C80_04355) - 925229..925771 (+) 543 WP_023350030.1 hypothetical protein -
  V6C80_RS04365 (V6C80_04360) - 925849..926838 (-) 990 WP_002435886.1 aromatic acid exporter family protein -
  V6C80_RS04370 (V6C80_04365) map 927012..927767 (+) 756 WP_002435911.1 type I methionyl aminopeptidase -
  V6C80_RS04375 (V6C80_04370) - 927912..928298 (+) 387 WP_002453601.1 hypothetical protein -
  V6C80_RS04380 (V6C80_04375) liaF 928313..929014 (+) 702 WP_047796452.1 cell wall-active antibiotics response protein LiaF -
  V6C80_RS04385 (V6C80_04380) vraS 929011..930057 (+) 1047 WP_002435929.1 sensor histidine kinase Regulator
  V6C80_RS04390 (V6C80_04385) vraR 930047..930676 (+) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  V6C80_RS04395 (V6C80_04390) - 930741..931994 (-) 1254 WP_002435884.1 YihY/virulence factor BrkB family protein -
  V6C80_RS04400 (V6C80_04395) - 932331..932615 (-) 285 WP_002435890.1 hypothetical protein -
  V6C80_RS04405 (V6C80_04400) - 932622..933086 (-) 465 WP_047796451.1 low molecular weight protein-tyrosine-phosphatase -
  V6C80_RS04410 (V6C80_04405) - 933227..933433 (+) 207 WP_002435959.1 DUF1128 domain-containing protein -
  V6C80_RS04415 (V6C80_04410) - 933447..934688 (+) 1242 WP_047796450.1 aminopeptidase -
  V6C80_RS04420 (V6C80_04415) - 934791..935321 (+) 531 WP_047796449.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23645.28 Da        Isoelectric Point: 4.8997

>NTDB_id=938338 V6C80_RS04390 WP_002469716.1 930047..930676(+) (vraR) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
MAIKVLFVDDHEMVRIGISSYLSTQQDIEVVGEGASGKEAIEKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPHIRVV
MLTSFIEDKEVYRALDAGVDSYILKTTSASDIADAVRKTYQGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=938338 V6C80_RS04390 WP_002469716.1 930047..930676(+) (vraR) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
ATGGCGATTAAAGTATTGTTTGTTGATGACCATGAAATGGTTAGAATTGGTATTTCAAGCTATCTATCTACACAACAGGA
TATTGAAGTAGTTGGAGAAGGTGCTTCTGGTAAAGAAGCTATCGAAAAAGCCCATGAGTTGAAACCAGATTTAATTTTAA
TGGATTTACTTATGGATGATATGGATGGTGTAGAAGCTACTACTGAAATTAAAAAGGATTTACCTCACATAAGAGTAGTA
ATGTTAACAAGCTTTATCGAGGATAAAGAAGTTTATCGAGCATTAGATGCTGGGGTAGATAGTTATATCTTAAAAACGAC
TAGTGCGAGTGACATTGCTGACGCAGTACGTAAAACATATCAAGGGGAATCTGTTTTTGAACCAGAAGTACTTGTAAAAA
TGAGAAACCGCATGAAAAAACGTGCTGAGTTATATGAAATGCTTACAGAGCGTGAAATGGAAATTTTATTATTAATTGCC
AAAGGTTACTCTAACCAAGAAATTGCTAGCGCCTCTCATATCACTATTAAAACTGTTAAAACACACGTAAGTAATATATT
GAGTAAGTTAGAAGTTCAAGATAGAACTCAAGCTGTTATTTATGCTTTCCAACATAATTTGATTCAATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

33.929

100

0.364