Detailed information    

insolico Bioinformatically predicted

Overview


Name   vraS   Type   Regulator
Locus tag   V6C80_RS04385 Genome accession   NZ_CP145258
Coordinates   929011..930057 (+) Length   348 a.a.
NCBI ID   WP_002435929.1    Uniprot ID   A0A0S4MEI3
Organism   Staphylococcus capitis subsp. urealyticus strain DSM 6717     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context


Location: 924011..935057
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6C80_RS04355 (V6C80_04350) - 924275..925000 (+) 726 WP_002469718.1 type 1 glutamine amidotransferase -
  V6C80_RS04360 (V6C80_04355) - 925229..925771 (+) 543 WP_023350030.1 hypothetical protein -
  V6C80_RS04365 (V6C80_04360) - 925849..926838 (-) 990 WP_002435886.1 aromatic acid exporter family protein -
  V6C80_RS04370 (V6C80_04365) map 927012..927767 (+) 756 WP_002435911.1 type I methionyl aminopeptidase -
  V6C80_RS04375 (V6C80_04370) - 927912..928298 (+) 387 WP_002453601.1 hypothetical protein -
  V6C80_RS04380 (V6C80_04375) liaF 928313..929014 (+) 702 WP_047796452.1 cell wall-active antibiotics response protein LiaF -
  V6C80_RS04385 (V6C80_04380) vraS 929011..930057 (+) 1047 WP_002435929.1 sensor histidine kinase Regulator
  V6C80_RS04390 (V6C80_04385) vraR 930047..930676 (+) 630 WP_002469716.1 two-component system response regulator VraR Regulator
  V6C80_RS04395 (V6C80_04390) - 930741..931994 (-) 1254 WP_002435884.1 YihY/virulence factor BrkB family protein -
  V6C80_RS04400 (V6C80_04395) - 932331..932615 (-) 285 WP_002435890.1 hypothetical protein -
  V6C80_RS04405 (V6C80_04400) - 932622..933086 (-) 465 WP_047796451.1 low molecular weight protein-tyrosine-phosphatase -
  V6C80_RS04410 (V6C80_04405) - 933227..933433 (+) 207 WP_002435959.1 DUF1128 domain-containing protein -
  V6C80_RS04415 (V6C80_04410) - 933447..934688 (+) 1242 WP_047796450.1 aminopeptidase -

Sequence


Protein


Download         Length: 348 a.a.        Molecular weight: 40136.57 Da        Isoelectric Point: 6.0600

>NTDB_id=938337 V6C80_RS04385 WP_002435929.1 929011..930057(+) (vraS) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
MNHYLRAIGSMLILVYSMLTAFLFIDKVFVNIIYFQGMFYTQIFGIPVFLFLNILIILLCIIVGSVLAYKINQQNDWLKS
QIERSIEGETVGINDQNLELYSETLEIYHTLVPLNQELHRLRMKTQNMTNENYNMNDVKVKKIIEDERQRLARELHDSVS
QQLFAASMMLSAIKESKLEPPLDQQIPVLEKMVQDSQLEMRALLLHLRPIGLKDKSLGEGIKDLVIDLQKKVPMKVVHEI
QDFKVPKGIEDHLFRITQEAISNTLRHSNGSKVTVELFNKEDYLLLRIQDNGKGFNVDEKFEQSYGLKNMRERALEIGAT
FHIVSLPDSGTRIEVKAPLNKEDESNGD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=938337 V6C80_RS04385 WP_002435929.1 929011..930057(+) (vraS) [Staphylococcus capitis subsp. urealyticus strain DSM 6717]
ATGAATCACTACTTGAGAGCAATTGGTTCAATGCTAATACTTGTATATAGCATGCTAACTGCTTTTTTATTCATTGATAA
GGTGTTCGTCAATATTATTTATTTTCAAGGGATGTTTTACACCCAAATTTTTGGAATACCAGTATTTTTATTCCTAAATA
TATTAATCATCTTACTATGTATTATCGTTGGCTCTGTGTTAGCGTATAAAATCAATCAACAAAATGATTGGCTTAAGTCA
CAAATTGAAAGGTCTATTGAAGGTGAAACAGTTGGCATTAATGATCAAAATCTAGAGTTATACAGTGAAACGTTAGAAAT
TTACCATACTTTAGTTCCTTTAAATCAAGAATTACACCGATTGAGAATGAAAACGCAGAATATGACCAATGAAAATTATA
ATATGAATGATGTAAAAGTGAAGAAAATCATTGAAGACGAACGTCAACGTTTAGCAAGAGAACTACATGACTCAGTTAGT
CAGCAATTATTTGCAGCAAGTATGATGTTGTCAGCGATTAAAGAGTCAAAATTAGAACCACCTTTAGACCAACAAATACC
TGTATTAGAGAAGATGGTTCAAGACTCTCAGCTCGAAATGAGAGCATTACTACTACATCTAAGACCTATTGGTTTGAAAG
ACAAATCATTAGGGGAGGGTATTAAAGATTTAGTTATTGATCTTCAAAAGAAAGTCCCTATGAAAGTTGTTCATGAAATT
CAAGATTTCAAAGTACCAAAAGGGATAGAAGATCATCTGTTTAGAATCACTCAAGAGGCTATTTCTAATACATTACGACA
CTCTAATGGTTCTAAGGTAACAGTTGAATTATTTAATAAAGAAGATTATTTACTACTTAGAATTCAAGATAATGGTAAAG
GTTTTAATGTAGATGAAAAATTTGAACAGAGTTATGGATTAAAAAATATGAGAGAACGTGCTTTAGAGATTGGTGCCACA
TTCCATATCGTATCGTTACCGGATTCAGGTACGAGAATAGAAGTTAAAGCACCATTGAATAAGGAGGATGAATCAAATGG
CGATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0S4MEI3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraS Staphylococcus aureus N315

93.586

98.563

0.922