Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   ACET1G_RS10190 Genome accession   NZ_CP169013
Coordinates   2036213..2036869 (+) Length   218 a.a.
NCBI ID   WP_000611339.1    Uniprot ID   -
Organism   Escherichia coli strain UTAK-22     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2031213..2041869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACET1G_RS10155 (ACET1G_10155) dcyD 2032093..2033079 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  ACET1G_RS10160 (ACET1G_10160) tcyL 2033094..2033762 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  ACET1G_RS10165 (ACET1G_10165) tcyN 2033759..2034511 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  ACET1G_RS10170 (ACET1G_10170) sdiA 2034741..2035463 (+) 723 WP_001154271.1 transcriptional regulator SdiA -
  ACET1G_RS10175 (ACET1G_10175) yecF 2035530..2035754 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  ACET1G_RS10180 (ACET1G_10180) yecU 2035741..2035917 (-) 177 WP_000590347.1 protein YecU -
  ACET1G_RS10185 (ACET1G_10185) - 2036000..2036071 (-) 72 Protein_1988 transcriptional regulator -
  ACET1G_RS10190 (ACET1G_10190) letA 2036213..2036869 (+) 657 WP_000611339.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  ACET1G_RS10195 (ACET1G_10195) uvrC 2036866..2038698 (+) 1833 WP_001283425.1 excinuclease ABC subunit UvrC Machinery gene
  ACET1G_RS10200 (ACET1G_10200) pgsA 2038755..2039303 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ACET1G_RS10220 (ACET1G_10220) - 2040298..2040579 (+) 282 WP_071529678.1 hypothetical protein -
  ACET1G_RS10225 (ACET1G_10225) - 2040769..2040909 (-) 141 WP_000078920.1 Hok/Gef family protein -
  ACET1G_RS10230 (ACET1G_10230) - 2041100..2041360 (-) 261 WP_000488108.1 ogr/Delta-like zinc finger family protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23920.71 Da        Isoelectric Point: 6.9614

>NTDB_id=938002 ACET1G_RS10190 WP_000611339.1 2036213..2036869(+) (letA) [Escherichia coli strain UTAK-22]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEVSCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=938002 ACET1G_RS10190 WP_000611339.1 2036213..2036869(+) (letA) [Escherichia coli strain UTAK-22]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGTATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482