Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   R8947_RS05455 Genome accession   NZ_AP028371
Coordinates   1085581..1087554 (+) Length   657 a.a.
NCBI ID   WP_002789903.1    Uniprot ID   -
Organism   Campylobacter coli strain BCH-10879     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1080581..1092554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8947_RS05425 (B10879_10670) flgH 1080769..1081467 (+) 699 WP_002787400.1 flagellar basal body L-ring protein FlgH -
  R8947_RS05430 (B10879_10680) ispG 1081551..1082624 (-) 1074 WP_002776443.1 flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase -
  R8947_RS05435 (B10879_10690) - 1082684..1084522 (-) 1839 WP_072214018.1 primosomal protein N' -
  R8947_RS05440 (B10879_10700) Cj0683 1084519..1084965 (-) 447 WP_052786221.1 type II secretion system protein Machinery gene
  R8947_RS05445 (B10879_10710) - 1084962..1085207 (-) 246 WP_002776428.1 hypothetical protein -
  R8947_RS05450 (B10879_10720) - 1085197..1085427 (-) 231 WP_002776426.1 hypothetical protein -
  R8947_RS05455 (B10879_10730) uvrB 1085581..1087554 (+) 1974 WP_002789903.1 excinuclease ABC subunit UvrB Machinery gene
  R8947_RS05460 (B10879_10740) - 1087589..1089013 (-) 1425 WP_002776421.1 anaerobic C4-dicarboxylate transporter -
  R8947_RS05465 (B10879_10750) - 1089200..1090450 (-) 1251 WP_002781614.1 RNA polymerase factor sigma-54 -
  R8947_RS05470 (B10879_10760) lptB 1090450..1091178 (-) 729 WP_002776419.1 LPS export ABC transporter ATP-binding protein -
  R8947_RS05475 (B10879_10770) tsaE 1091171..1091578 (-) 408 WP_002776418.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  R8947_RS05480 (B10879_10780) - 1091575..1091820 (-) 246 WP_002776417.1 RNA-binding S4 domain-containing protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 76038.45 Da        Isoelectric Point: 6.4586

>NTDB_id=93786 R8947_RS05455 WP_002789903.1 1085581..1087554(+) (uvrB) [Campylobacter coli strain BCH-10879]
MLELTSDFKPSPDQEQAIQGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
DMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDAMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKIELNERLAQFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKNRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKDCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQEAYNQKHNITPTSVKRHIEESLKNEENLGEIYRKGKKFEKMPANERAKIVKELRKQMLEAAKALE
FEKAATLRDEINKLKDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=93786 R8947_RS05455 WP_002789903.1 1085581..1087554(+) (uvrB) [Campylobacter coli strain BCH-10879]
ATGTTAGAACTTACAAGCGATTTTAAACCAAGTCCTGATCAAGAACAAGCAATACAAGGTATTGTCAAAAGCATAAAAAA
AGGTAATAAATATCAAACCCTACTCGGCGTAACAGGAAGCGGAAAGACTTTTACCATGGCAAATGTCATAAAAGAACTCA
ATATGCCAACCCTTATCATGAGTCATAACAAAAGCCTTTGCGCCCAGCTTTATAGCGAATTTAAAGGTTTTTTTTCTAAG
AACCATGTGGAATATTTTATTTCTTATTATGATTATTATCAGCCTGAAGCTTATATACCGCGCACCGATGTTTTTATAGA
AAAAGATAGCTCCACAAATGAGGATCTAGAACGCTTAAGACTTAGCGCAACTGCTTCGCTTTTAAGCTATGAGGATGTGG
TTTGTATCGCTAGTGTCTCGGCTAATTATGGACTTGGAAATCCAAATGAATACATAGGAATGGTTTTAATCTTTGAACTA
GACATGCAAATTTCACAAAAAGAACTTTTAAAGAAACTTGTAGACATGGGTTATAAAAGAAATGATAATTTCTTTGATCG
TGCTGATTTTCGCGTACAAGGTGATATTATAGATATTTATCCTGCTTATTACGAAGATGAAGTAGTAAGACTTGAATTTT
TTGGTGATGAACTGGATGCAATGTATCATTATAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTT
TATCCTACAAGTCAATTTAGTGTAGGAGAAACTAGATTAAAGCAAGCTATTAAAGATATAAAGATAGAACTTAATGAGCG
TTTGGCGCAATTTGAACATGAAAACAAGCTTGTAGAATACCAACGCCTTAAACAACGCGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGGATGTGCAAAGGGGTTGAAAACTATGCTAGACATTTAACAGGGCTTAAAGAAGGCGATACGCCTTAT
ACACTTTTTGATTATTTTGCGATTAAAAATAGGAAATTTCTTGTTATAGTCGATGAAAGCCATGTTTCTTTACCACAATT
TAGAGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTAGATTATGGTTTTCGTCTTCCATCAGCTCTTGATA
ATCGTCCTTTAATGTTTGATGAATTTATCCATAAAGATTGTCAGTTTCTTTTTGTTTCAGCCACCCCTGCCCCGCTTGAG
CTTGAACTTAGCAAGGAAAATATCTTTCATCAAATTATGCGTCCAACAGGATTACTTGATCCTTTGATAGAACTTAAAGA
TAGCGATAATCAAGTTGAAATTTTATTTGATGAAGCCAAAAAAGTTATACAAAGAAACGAACGCGTTTTAGTTACTGTGT
TGACTAAAAAACTAGCTGAAGAGCTTACAAGGTATTATTTAGAACTTGGTATTAAAGTAAAATACATGCATTCAGATATT
GATGCAATAGAACGCAATGAAATCATAAGAGGCTTAAGAAGCGGTGCTTTTGATATGTTAATAGGTATAAATTTACTTAG
AGAAGGACTTGATTTGCCTGAGGTTTCGCTTATTGCCATTATGGACGCAGATAAGGAGGGTTTTTTAAGAAGTACTACAA
GTTTAATCCAAACCATGGGAAGAGCTGCTAGAAATGTCAATGGTAAAGTTTTACTCTTTTGCAAAAAGATTACAAAATCC
ATGCAAGAAGCTATGGATACTACAAATGAGCGTCGCAAACTTCAAGAAGCTTACAATCAAAAACATAACATCACCCCAAC
TTCAGTCAAGCGACACATCGAAGAAAGTTTAAAAAATGAAGAAAACTTAGGAGAAATTTATCGCAAAGGTAAAAAATTTG
AAAAAATGCCTGCTAATGAAAGAGCTAAAATCGTAAAAGAGCTTCGTAAACAAATGCTTGAAGCTGCTAAAGCGCTCGAA
TTTGAAAAAGCAGCGACTTTAAGAGATGAGATCAATAAATTAAAAGATTTATAG

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(8-116)

UvrB/uvrC motif (UVR)

(623-656)

Ultra-violet resistance protein B (UvrB)

(552-593)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

UvrB interaction domain (UvrB_inter)

(158-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.152

99.848

0.501
  uvrB Streptococcus pneumoniae TIGR4

50.152

99.848

0.501
  uvrB Streptococcus pneumoniae D39

50.152

99.848

0.501