Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LmYK1_RS00045 Genome accession   NZ_AP025728
Coordinates   10398..10952 (+) Length   184 a.a.
NCBI ID   WP_112193831.1    Uniprot ID   A0A2Z4VY05
Organism   Ligilactobacillus murinus strain YK1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 11435..12607 10398..10952 flank 483


Gene organization within MGE regions


Location: 10398..12607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LmYK1_RS00045 (LmYK1_00090) ssb 10398..10952 (+) 555 WP_112193831.1 single-stranded DNA-binding protein Machinery gene
  LmYK1_RS00050 (LmYK1_00100) rpsR 10974..11210 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  LmYK1_RS00055 (LmYK1_00110) - 11435..12607 (+) 1173 WP_004050661.1 IS256 family transposase -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20064.77 Da        Isoelectric Point: 4.6382

>NTDB_id=93771 LmYK1_RS00045 WP_112193831.1 10398..10952(+) (ssb) [Ligilactobacillus murinus strain YK1]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGSSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGSGFDTTSN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=93771 LmYK1_RS00045 WP_112193831.1 10398..10952(+) (ssb) [Ligilactobacillus murinus strain YK1]
TTGATCAATTCAGTTGTTCTAGTAGGTCGCTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGTGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAATTTTACCCACAAAGGTTCCTTAGTAGGGATCGAAGGCCGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAGCAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACAAATGATGCTTTTGGTGGTAGTGGTTTTGATACCACTTCAAAC
AATAGTAACAATGCGGCTGATCCATTTGCCGGTGGGCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z4VY05

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.081

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.15

100

0.571

Multiple sequence alignment