Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   V5F86_RS15860 Genome accession   NZ_CP145137
Coordinates   3110006..3110650 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus spizizenii strain kcgeb_sc     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3105006..3115650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F86_RS15825 (V5F86_15830) - 3106200..3106631 (+) 432 WP_014114977.1 Na(+)/H(+) antiporter subunit B -
  V5F86_RS15830 (V5F86_15835) - 3106631..3106972 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  V5F86_RS15835 (V5F86_15840) - 3106965..3108446 (+) 1482 WP_268392284.1 Na+/H+ antiporter subunit D -
  V5F86_RS15840 (V5F86_15845) - 3108452..3108928 (+) 477 WP_014114979.1 Na+/H+ antiporter subunit E -
  V5F86_RS15845 (V5F86_15850) - 3108928..3109212 (+) 285 WP_014114980.1 Na(+)/H(+) antiporter subunit F1 -
  V5F86_RS15850 (V5F86_15855) mnhG 3109196..3109570 (+) 375 WP_014114981.1 monovalent cation/H(+) antiporter subunit G -
  V5F86_RS15855 (V5F86_15860) - 3109609..3109989 (-) 381 WP_003220719.1 hotdog fold thioesterase -
  V5F86_RS15860 (V5F86_15865) comA 3110006..3110650 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  V5F86_RS15865 (V5F86_15870) comP 3110731..3113037 (-) 2307 WP_268392280.1 two-component system sensor histidine kinase ComP Regulator
  V5F86_RS15870 (V5F86_15875) comX 3113052..3113225 (-) 174 WP_268392278.1 competence pheromone ComX -
  V5F86_RS15875 (V5F86_15880) comQ 3113240..3114106 (-) 867 WP_268392274.1 polyprenyl synthetase family protein Regulator
  V5F86_RS15880 (V5F86_15885) degQ 3114291..3114431 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  V5F86_RS15885 (V5F86_15890) - 3114653..3114778 (+) 126 WP_014114985.1 hypothetical protein -
  V5F86_RS15890 (V5F86_15895) - 3114893..3115261 (+) 369 WP_268454380.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=937438 V5F86_RS15860 WP_003220716.1 3110006..3110650(-) (comA) [Bacillus spizizenii strain kcgeb_sc]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=937438 V5F86_RS15860 WP_003220716.1 3110006..3110650(-) (comA) [Bacillus spizizenii strain kcgeb_sc]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATCT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATATTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTTGAGGATTATTTTGAGGAAGCGATTCGTGCGGGACTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCACTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCCTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1