Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   V3314_RS10985 Genome accession   NZ_CP145113
Coordinates   2414210..2416426 (+) Length   738 a.a.
NCBI ID   WP_338460211.1    Uniprot ID   -
Organism   Pseudomonas sp. TE3-3-F2023     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2409210..2421426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3314_RS10965 (V3314_10965) - 2411074..2411697 (+) 624 WP_046617068.1 glutathione S-transferase -
  V3314_RS10970 (V3314_10970) - 2411842..2412774 (+) 933 WP_046617069.1 ABC transporter ATP-binding protein -
  V3314_RS10975 (V3314_10975) - 2412771..2413550 (+) 780 WP_046617070.1 ABC transporter permease -
  V3314_RS10980 (V3314_10980) - 2413560..2414066 (-) 507 Protein_2141 DUF2062 domain-containing protein -
  V3314_RS10985 (V3314_10985) comA 2414210..2416426 (+) 2217 WP_338460211.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3314_RS10990 (V3314_10990) exbB 2416644..2417279 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3314_RS10995 (V3314_10995) - 2417276..2417710 (+) 435 WP_046617071.1 biopolymer transporter ExbD -
  V3314_RS11000 (V3314_11000) lpxK 2417710..2418711 (+) 1002 WP_046617072.1 tetraacyldisaccharide 4'-kinase -
  V3314_RS11005 (V3314_11005) - 2418756..2418941 (+) 186 WP_003247142.1 Trm112 family protein -
  V3314_RS11010 (V3314_11010) kdsB 2418938..2419702 (+) 765 WP_085602149.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3314_RS11015 (V3314_11015) - 2419702..2420166 (+) 465 WP_085602150.1 low molecular weight protein-tyrosine-phosphatase -
  V3314_RS11020 (V3314_11020) murB 2420163..2421182 (+) 1020 WP_338460212.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 79566.38 Da        Isoelectric Point: 9.6131

>NTDB_id=937250 V3314_RS10985 WP_338460211.1 2414210..2416426(+) (comA) [Pseudomonas sp. TE3-3-F2023]
MRTGMLALALGLLCLGFLPALPSVGWLVLLAIAGGVGLFTRLWPLGCFLLGLCWACWSAQQALDDRLAAGLDGRTLWLEG
QVVGLPTRTAQGVRFELDAPRSRRAELPQRLQLSWFDGPSLRAGEQWRLAVTLQRPAGLLNPYGSDREAQLLARRVGATG
TVKAGQLLAPATGGWRDALRQRLLAVEAHGQQAALVALVIGDGAGLAREDWQTLQATGTVHLLVISGQHIGLVAGLLYGL
VAGLARWGLWPARLPWLPWACGLAMAAALAYGWLAGGGVPVQRACLMLAVVLLWRLRFRHLGAALPLLLALVAVLLVEPL
AALLPGFWLSFAAVATLGYCFSARLGGWRPWQAWTRAQWGIAIGLLPVLLATGLPVSVSAPLANLVAVPWVSLAVLPLAL
LGALLLPLGEVGEVLLWLAGGLLDVLFRLLELVAQQQSAWLPAVLPLWAWLLVCLGTLLVLMPRGVPLRGLGGVMLLALW
VPRETLPFGQVEVWHLDVGQGLAVLLRTRHHNMLYDAGPARGESDLGERVVLPTLRKLGVGSLDLMLVSHAHADHAGGAG
AILRGLPVKRVIGGEVLDDMQLQPCASGEQWMWDGVRFSLWRWADGQSSNDRSCVLLVEAQGERLLLAGDMEAGAERAWL
AATEAPWIDWLQSPHHGSRSSSSEAFIRATAPRGVLISRGRNNSFGHPHAQVVERYRRHGVVMHDTAEQGALRLVLGRLG
EVESVRRQRRFWRDAVGG

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=937250 V3314_RS10985 WP_338460211.1 2414210..2416426(+) (comA) [Pseudomonas sp. TE3-3-F2023]
ATGCGCACAGGGATGCTTGCGCTCGCGCTCGGGCTGTTGTGCCTGGGCTTTCTCCCCGCATTGCCATCGGTCGGATGGCT
GGTGCTGCTGGCTATAGCCGGTGGCGTCGGCCTTTTCACCCGGCTGTGGCCGTTGGGCTGTTTTCTGTTGGGTTTGTGTT
GGGCCTGCTGGTCCGCGCAGCAGGCGCTGGATGACCGCCTGGCCGCCGGGCTGGATGGCCGCACCCTGTGGCTTGAAGGC
CAGGTGGTCGGCCTGCCGACCCGGACTGCGCAAGGTGTGCGCTTCGAGCTGGATGCGCCCCGCTCGCGGCGGGCAGAACT
GCCGCAGCGCCTGCAACTGAGCTGGTTCGACGGGCCGTCGCTGCGGGCGGGCGAGCAGTGGCGGCTGGCGGTGACCTTGC
AGCGCCCGGCCGGGCTGCTCAATCCGTATGGGTCAGACCGGGAGGCGCAACTGCTGGCGCGCCGGGTTGGGGCCACCGGC
ACGGTCAAAGCCGGGCAGTTGCTGGCGCCTGCAACCGGCGGTTGGCGCGATGCGCTGCGCCAGCGCCTGCTGGCAGTCGA
GGCCCATGGCCAGCAGGCAGCGTTGGTAGCGCTGGTTATTGGCGACGGGGCGGGTCTGGCCCGGGAGGACTGGCAAACGT
TGCAGGCCACCGGCACGGTGCACCTGCTAGTGATTTCGGGCCAGCACATCGGCCTGGTTGCCGGCTTGCTGTATGGCCTG
GTTGCCGGGCTGGCGCGTTGGGGGCTGTGGCCCGCTCGGCTGCCCTGGCTGCCCTGGGCGTGCGGCCTGGCCATGGCTGC
GGCACTGGCCTACGGTTGGTTGGCTGGTGGCGGTGTACCGGTGCAGCGTGCCTGCCTGATGCTGGCCGTGGTGTTGCTCT
GGCGCCTGCGTTTTCGCCACCTTGGTGCGGCCTTGCCGTTGCTGCTGGCGCTGGTTGCCGTGCTACTGGTGGAGCCGTTG
GCCGCGCTGCTGCCCGGGTTCTGGCTGTCGTTCGCGGCCGTGGCCACGCTTGGTTATTGCTTCAGTGCACGCCTGGGCGG
CTGGCGGCCCTGGCAGGCCTGGACGCGGGCGCAATGGGGGATTGCCATCGGTTTGCTGCCGGTGCTGCTGGCTACGGGCT
TGCCGGTGAGCGTAAGTGCGCCGCTGGCCAACCTTGTTGCGGTGCCGTGGGTCAGCCTGGCGGTGCTGCCGTTGGCATTG
CTGGGGGCCTTGCTGCTGCCGCTGGGCGAGGTAGGGGAGGTGCTGTTGTGGCTGGCGGGTGGTTTGCTCGACGTGCTTTT
CCGGCTGCTGGAGTTGGTGGCCCAACAGCAGTCGGCGTGGCTGCCAGCCGTTCTGCCATTGTGGGCCTGGCTGCTGGTGT
GCCTGGGTACGCTGCTGGTTTTGATGCCCCGTGGCGTGCCACTGCGCGGGTTGGGGGGCGTGATGCTGCTGGCGCTATGG
GTACCCCGGGAGACGCTGCCGTTCGGCCAGGTCGAGGTCTGGCATCTGGATGTCGGTCAGGGGCTGGCGGTACTGTTGCG
CACCCGGCATCACAACATGCTGTACGACGCAGGGCCGGCCAGGGGAGAGAGCGACCTGGGCGAGCGGGTGGTGTTGCCGA
CCTTGCGCAAGCTGGGGGTGGGTAGCCTGGACCTGATGCTGGTCAGCCACGCCCATGCCGACCACGCCGGTGGTGCTGGC
GCAATCCTGCGTGGCTTGCCGGTCAAACGGGTGATCGGCGGCGAAGTGCTGGATGACATGCAACTGCAACCTTGTGCCAG
TGGCGAGCAATGGATGTGGGATGGCGTGCGCTTTTCGCTATGGCGCTGGGCTGATGGGCAGAGCAGCAATGACCGCTCCT
GTGTGTTGCTGGTCGAGGCACAAGGTGAGCGATTGTTGCTGGCGGGTGATATGGAAGCCGGTGCCGAACGGGCCTGGCTG
GCGGCCACAGAAGCGCCGTGGATCGACTGGTTGCAGTCGCCGCACCATGGCAGCCGCAGTTCATCCAGCGAGGCCTTCAT
CCGCGCCACGGCGCCGCGCGGGGTACTGATTTCGCGCGGGCGCAACAACAGCTTCGGGCACCCGCACGCGCAGGTGGTCG
AACGTTATCGGCGGCATGGGGTGGTGATGCATGACACGGCGGAGCAGGGGGCGTTGCGGTTGGTGCTGGGGAGGCTGGGG
GAGGTCGAGAGTGTGCGCCGACAGAGGCGTTTCTGGAGGGATGCGGTCGGTGGCTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-674)

Domain of unknown function (DUF4131) (DUF4131)

(21-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

59.249

97.425

0.577
  comA Ralstonia pseudosolanacearum GMI1000

35.488

100

0.379