Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   V3314_RS10990 Genome accession   NZ_CP145113
Coordinates   2416644..2417279 (+) Length   211 a.a.
NCBI ID   WP_003259970.1    Uniprot ID   V9UW47
Organism   Pseudomonas sp. TE3-3-F2023     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2411644..2422279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V3314_RS10970 (V3314_10970) - 2411842..2412774 (+) 933 WP_046617069.1 ABC transporter ATP-binding protein -
  V3314_RS10975 (V3314_10975) - 2412771..2413550 (+) 780 WP_046617070.1 ABC transporter permease -
  V3314_RS10980 (V3314_10980) - 2413560..2414066 (-) 507 Protein_2141 DUF2062 domain-containing protein -
  V3314_RS10985 (V3314_10985) comA 2414210..2416426 (+) 2217 WP_338460211.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  V3314_RS10990 (V3314_10990) exbB 2416644..2417279 (+) 636 WP_003259970.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  V3314_RS10995 (V3314_10995) - 2417276..2417710 (+) 435 WP_046617071.1 biopolymer transporter ExbD -
  V3314_RS11000 (V3314_11000) lpxK 2417710..2418711 (+) 1002 WP_046617072.1 tetraacyldisaccharide 4'-kinase -
  V3314_RS11005 (V3314_11005) - 2418756..2418941 (+) 186 WP_003247142.1 Trm112 family protein -
  V3314_RS11010 (V3314_11010) kdsB 2418938..2419702 (+) 765 WP_085602149.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  V3314_RS11015 (V3314_11015) - 2419702..2420166 (+) 465 WP_085602150.1 low molecular weight protein-tyrosine-phosphatase -
  V3314_RS11020 (V3314_11020) murB 2420163..2421182 (+) 1020 WP_338460212.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22855.16 Da        Isoelectric Point: 7.3616

>NTDB_id=937251 V3314_RS10990 WP_003259970.1 2416644..2417279(+) (exbB) [Pseudomonas sp. TE3-3-F2023]
MWELVKSGGWMMLPIILSSIAAMAIVVERLWTLRVSRVTPPHLLGQVWIWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHELERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMVGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=937251 V3314_RS10990 WP_003259970.1 2416644..2417279(+) (exbB) [Pseudomonas sp. TE3-3-F2023]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGCTCCATCGCTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGTCAGTCGCGTCACCCCGCCGCACCTGCTCGGCCAGGTGTGGATATGGATCAAGGACA
AGCAACTGACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCACTGGGCGAAATCCTTGCCGCCGGCCTGGCCAAC
TCGCGCCATGGCCGTGAAATCATGAAGGAATGCATCGAGGAGGCCGCTTCGCGCGTCATCCACGAACTGGAACGCTACAT
CAGCACCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTGCTGGGTACCGTGCTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACCGCCAACGCCGCAGTGCTGGCCGGTGGTATCTCCAAGGCCCTGGTCACCACCGCG
GCCGGCCTGATGGTCGGTATTCCGGCGGTGTTCTTCCACCGCTTCCTGCTCCGCCGCATCGATGAGCTGGTGGTGGGCAT
GGAGCAGGAGGCGATCAAGCTGGTAGAAGTGATCCAGGGCGACCGTGAAGTGGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V9UW47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.938

100

0.829