Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G10_RS10770 Genome accession   NZ_CP145086
Coordinates   2054470..2054886 (-) Length   138 a.a.
NCBI ID   WP_353425314.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2049470..2059886
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS10745 (V5G10_10775) - 2049662..2050417 (-) 756 Protein_2077 opacity family porin -
  V5G10_RS10750 (V5G10_10780) - 2050983..2051500 (-) 518 Protein_2078 pilin -
  V5G10_RS10755 (V5G10_10785) - 2052118..2052198 (-) 81 Protein_2079 pilin -
  V5G10_RS10760 (V5G10_10790) pilE 2052316..2052735 (-) 420 WP_353425312.1 pilin Machinery gene
  V5G10_RS10765 (V5G10_10795) lpxC 2052841..2053764 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G10_RS10770 (V5G10_10800) pilE 2054470..2054886 (-) 417 WP_353425314.1 pilin Machinery gene
  V5G10_RS10775 (V5G10_10805) - 2055402..2055760 (-) 359 Protein_2083 pilin -
  V5G10_RS10780 (V5G10_10810) - 2055801..2056127 (-) 327 Protein_2084 pilin -
  V5G10_RS10785 (V5G10_10815) - 2056145..2056510 (-) 366 Protein_2085 pilin -
  V5G10_RS10790 (V5G10_10820) - 2056941..2057312 (-) 372 Protein_2086 pilin -
  V5G10_RS10795 pilE 2057251..2057712 (-) 462 WP_321160094.1 pilin Machinery gene
  V5G10_RS10800 (V5G10_10825) - 2057737..2058086 (-) 350 Protein_2088 pilin -
  V5G10_RS10805 (V5G10_10830) - 2058267..2058761 (-) 495 WP_353425316.1 pilin -
  V5G10_RS10810 (V5G10_10835) - 2058800..2059213 (-) 414 Protein_2090 pilin -
  V5G10_RS10815 (V5G10_10840) - 2059458..2059589 (-) 132 WP_010356054.1 hypothetical protein -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 14978.84 Da        Isoelectric Point: 9.4564

>NTDB_id=937112 V5G10_RS10770 WP_353425314.1 2054470..2054886(-) (pilE) [Neisseria gonorrhoeae strain WHO_C_2024]
MPTRLDSRLRGNDEAILLAEGQKSAVTEYYLNHGIWPKDNTSAGVASASDIKGKYVKEVKVEKGVVTATMASSNVNKEIQ
GKKLSLWGRRENGSVKWFCGQPVTRNDAKADDVKADAANAIETKHLPSTCRDKASDAT

Nucleotide


Download         Length: 417 bp        

>NTDB_id=937112 V5G10_RS10770 WP_353425314.1 2054470..2054886(-) (pilE) [Neisseria gonorrhoeae strain WHO_C_2024]
GTGCCGACAAGGCTGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTCAC
CGAGTATTACCTGAATCACGGCATATGGCCGAAAGACAACACTTCTGCCGGCGTGGCATCCGCTTCAGACATCAAAGGCA
AATATGTTAAGGAAGTTAAAGTCGAAAAAGGCGTCGTTACCGCCACAATGGCTTCAAGCAACGTAAACAAAGAAATCCAA
GGCAAAAAACTCTCCCTGTGGGGCAGGCGTGAAAACGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAACGA
CGCCAAAGCCGACGACGTCAAAGCCGACGCCGCCAACGCCATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATAAGG
CATCTGATGCCACCTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

74.468

100

0.761
  pilE Neisseria gonorrhoeae strain FA1090

74.265

98.551

0.732