Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5G10_RS10760 Genome accession   NZ_CP145086
Coordinates   2052316..2052735 (-) Length   139 a.a.
NCBI ID   WP_353425312.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_C_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2047316..2057735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G10_RS10735 (V5G10_10765) - 2047864..2048736 (-) 873 WP_003693577.1 prephenate dehydrogenase -
  V5G10_RS10740 (V5G10_10770) - 2048821..2049633 (+) 813 WP_003689398.1 carbon-nitrogen hydrolase family protein -
  V5G10_RS10745 (V5G10_10775) - 2049662..2050417 (-) 756 Protein_2077 opacity family porin -
  V5G10_RS10750 (V5G10_10780) - 2050983..2051500 (-) 518 Protein_2078 pilin -
  V5G10_RS10755 (V5G10_10785) - 2052118..2052198 (-) 81 Protein_2079 pilin -
  V5G10_RS10760 (V5G10_10790) pilE 2052316..2052735 (-) 420 WP_353425312.1 pilin Machinery gene
  V5G10_RS10765 (V5G10_10795) lpxC 2052841..2053764 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5G10_RS10770 (V5G10_10800) pilE 2054470..2054886 (-) 417 WP_353425314.1 pilin Machinery gene
  V5G10_RS10775 (V5G10_10805) - 2055402..2055760 (-) 359 Protein_2083 pilin -
  V5G10_RS10780 (V5G10_10810) - 2055801..2056127 (-) 327 Protein_2084 pilin -
  V5G10_RS10785 (V5G10_10815) - 2056145..2056510 (-) 366 Protein_2085 pilin -
  V5G10_RS10790 (V5G10_10820) - 2056941..2057312 (-) 372 Protein_2086 pilin -
  V5G10_RS10795 pilE 2057251..2057712 (-) 462 WP_321160094.1 pilin Machinery gene

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 14814.61 Da        Isoelectric Point: 8.7094

>NTDB_id=937111 V5G10_RS10760 WP_353425312.1 2052316..2052735(-) (pilE) [Neisseria gonorrhoeae strain WHO_C_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVAGYCPNHGKWPENNDKAGVASPSDIKGKYVKSVTVTNGVVTAEMASSNVNKEIK
GKKLSLWAKRQAGSVKWFCGQPVKRDDAGAKDDAVKDAAADKIETKHLPSTCRDTSSAE

Nucleotide


Download         Length: 420 bp        

>NTDB_id=937111 V5G10_RS10760 WP_353425312.1 2052316..2052735(-) (pilE) [Neisseria gonorrhoeae strain WHO_C_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTGC
CGGGTATTGCCCGAATCACGGCAAATGGCCGGAAAACAACGACAAGGCCGGCGTGGCATCCCCCTCCGACATCAAAGGCA
AATATGTTAAAAGCGTTACGGTCACAAACGGCGTCGTCACCGCCGAAATGGCTTCAAGCAACGTAAACAAAGAAATCAAA
GGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTAAGCGCGACGA
CGCCGGCGCCAAAGACGACGCCGTCAAAGACGCCGCCGCCGACAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGTG
ATACGTCATCTGCCGAATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

67.857

100

0.683
  pilE Neisseria gonorrhoeae strain FA1090

66.187

100

0.662