Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsF   Type   Machinery gene
Locus tag   R8620_RS07545 Genome accession   NZ_AP028369
Coordinates   1461968..1463149 (-) Length   393 a.a.
NCBI ID   WP_052804727.1    Uniprot ID   -
Organism   Campylobacter jejuni strain BCH-10666     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1456968..1468149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8620_RS07515 (B10666_15000) - 1457512..1457853 (+) 342 WP_002869194.1 hypothetical protein -
  R8620_RS07520 (B10666_15010) flgM 1457916..1458113 (+) 198 WP_052804731.1 flagellar biosynthesis anti-sigma factor FlgM -
  R8620_RS07525 (B10666_15020) - 1458156..1458590 (+) 435 WP_002779263.1 flagellar protein FlgN -
  R8620_RS07530 (B10666_15030) flgK 1458600..1460426 (+) 1827 WP_052804730.1 flagellar hook-associated protein FlgK -
  R8620_RS07535 (B10666_15040) - 1460443..1461207 (+) 765 WP_052804729.1 TIGR02757 family protein -
  R8620_RS07540 (B10666_15050) - 1461211..1461975 (+) 765 WP_052804728.1 TSUP family transporter -
  R8620_RS07545 (B10666_15060) ctsF 1461968..1463149 (-) 1182 WP_052804727.1 type II secretion system F family protein Machinery gene
  R8620_RS07550 (B10666_15070) ctsE 1463146..1464705 (-) 1560 WP_052804726.1 GspE/PulE family protein Machinery gene
  R8620_RS07555 (B10666_15080) - 1464695..1465282 (-) 588 Protein_1470 transformation system protein -
  R8620_RS07560 (B10666_15090) ctsP 1465286..1465894 (-) 609 WP_002851464.1 ATP-binding protein Machinery gene
  R8620_RS07565 (B10666_15100) ctsD 1465887..1467299 (-) 1413 WP_052804725.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  R8620_RS07570 (B10666_15110) ctsR 1467277..1467588 (-) 312 WP_052804724.1 hypothetical protein Machinery gene

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 45708.28 Da        Isoelectric Point: 9.0939

>NTDB_id=93699 R8620_RS07545 WP_052804727.1 1461968..1463149(-) (ctsF) [Campylobacter jejuni strain BCH-10666]
MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIINIKEIQKSNFQRLKDENFILFFKELALLCEVGLSVQEAIGE
LYLMHSCKIMKKILDNLILAQNLNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
LVFLSIIGAFLFLMLFVVPNFKDLFENLGTSLPFITHVMLEIYNFLDDYGFFCIFLFVIFIVMLILAYKNFHSFAFSCDF
LFLKIPLISRLIIYNQNYYFFMVFSLLLKNGISISKAFDLAIIGLENKFLIFQYKKLFSFIDSGLELSQAFKKIDIFDSL
VFSMLSVAMKSGRLEVLSEEIAKYYQQKSENLMDRFLIFLEPMMTLFVALLVLFLALGIFLPMWELSSGVNFN

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=93699 R8620_RS07545 WP_052804727.1 1461968..1463149(-) (ctsF) [Campylobacter jejuni strain BCH-10666]
ATGAAATTTTATGAAGTAGAATTTCTTAAAAACAATCAAAATTATACAAAAACTATAAAAGCTGAAAATTTAAATACAGC
ACAAGCAAAAGCCTTATCAAAGAATTGGAAAATCATTAATATAAAAGAAATTCAAAAATCTAATTTTCAGAGATTAAAAG
ATGAAAATTTTATACTCTTTTTTAAAGAGCTGGCTTTGTTGTGTGAAGTTGGATTAAGTGTTCAAGAAGCGATTGGAGAA
TTATATCTTATGCATTCTTGCAAGATTATGAAAAAAATATTAGACAATTTAATTTTAGCCCAAAATCTAAATCAAGCTTT
TGAAAATGCTAATTTTGGATTAAATCGTGCGGAGTTAGCTTTGATTAAAACGGCTGAAAAGACAGGAAAAATCAGTGAAG
TGTTTAGTCAAATTTCTAAACTTCGAGAAAAAAGCTTAGAGAGTCAAAAACAATTAAAAAAGGCTTTTAGATATCCTACT
TTGGTTTTTTTAAGTATTATCGGAGCATTTTTGTTTTTAATGCTTTTTGTAGTGCCTAATTTTAAAGATTTATTTGAAAA
TTTAGGCACGAGTTTGCCTTTTATCACGCATGTAATGTTAGAAATTTATAATTTTTTAGATGACTATGGATTTTTTTGCA
TATTTTTGTTTGTTATTTTTATTGTTATGCTTATTTTAGCTTATAAAAATTTTCATTCTTTTGCTTTTTCTTGCGATTTT
TTATTTTTAAAAATACCTTTGATTTCTCGTTTGATTATTTATAATCAAAATTATTATTTTTTTATGGTTTTTTCTTTGCT
TTTAAAAAATGGAATTTCAATATCTAAAGCTTTTGATTTAGCTATTATAGGGCTTGAAAATAAATTTTTAATTTTTCAGT
ATAAAAAACTTTTTAGTTTTATAGATTCTGGTCTTGAGTTAAGTCAGGCTTTTAAAAAGATTGATATTTTTGATTCTTTG
GTATTTTCTATGCTTAGCGTTGCGATGAAAAGTGGAAGACTTGAAGTGTTAAGTGAAGAAATTGCCAAATATTATCAACA
AAAAAGTGAAAATTTAATGGATAGATTTTTGATTTTTTTAGAGCCTATGATGACTTTATTTGTGGCGCTTTTAGTTTTGT
TTTTGGCTTTAGGTATATTTTTACCTATGTGGGAGCTTAGCTCAGGGGTTAATTTTAACTAA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(261-382)

Type II secretion system (T2SS), protein F (T2SSF)

(60-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsF Campylobacter jejuni subsp. jejuni 81-176

97.959

99.746

0.977

Multiple sequence alignment