Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   V5G03_RS02690 Genome accession   NZ_CP145077
Coordinates   522629..523102 (+) Length   157 a.a.
NCBI ID   WP_172617250.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_G_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 517629..528102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G03_RS02665 (V5G03_02665) dnaB 518047..519453 (+) 1407 WP_050162865.1 replicative DNA helicase -
  V5G03_RS02670 (V5G03_02670) pilH 519761..520423 (+) 663 WP_106346848.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G03_RS02675 (V5G03_02675) pilI 520455..521063 (+) 609 WP_106346847.1 type IV pilus modification protein PilV Machinery gene
  V5G03_RS02680 (V5G03_02680) pilJ 521060..522037 (+) 978 WP_106346846.1 PilW family protein Machinery gene
  V5G03_RS02685 (V5G03_02685) pilK 522016..522627 (+) 612 WP_106346845.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G03_RS02690 (V5G03_02690) pilL 522629..523102 (+) 474 WP_172617250.1 PilX family type IV pilin Machinery gene
  V5G03_RS02695 (V5G03_02695) - 523172..523480 (-) 309 WP_010951048.1 AzlD family protein -
  V5G03_RS02700 (V5G03_02700) - 523477..524185 (-) 709 Protein_522 AzlC family ABC transporter permease -
  V5G03_RS02705 (V5G03_02705) dut 524351..524803 (+) 453 WP_047925987.1 dUTP diphosphatase -
  V5G03_RS02710 (V5G03_02710) dapC 524881..526068 (+) 1188 WP_003701073.1 succinyldiaminopimelate transaminase -
  V5G03_RS02715 (V5G03_02715) yaaA 526224..527003 (+) 780 WP_003687925.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17443.10 Da        Isoelectric Point: 9.4067

>NTDB_id=936941 V5G03_RS02690 WP_172617250.1 522629..523102(+) (pilL) [Neisseria gonorrhoeae strain WHO_G_2024]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYSVSVRLVNEGKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQAYSDTLSADSGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=936941 V5G03_RS02690 WP_172617250.1 522629..523102(+) (pilL) [Neisseria gonorrhoeae strain WHO_G_2024]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTGCGGCTTGTCAATGAGGGAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTCTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGCCTATTCGGACACCTTGTCCGCAGATAGCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

92.994

100

0.93
  pilX Neisseria meningitidis 8013

85.35

100

0.854