Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   V5G03_RS02670 Genome accession   NZ_CP145077
Coordinates   519761..520423 (+) Length   220 a.a.
NCBI ID   WP_106346848.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_G_2024     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 514761..525423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5G03_RS02645 (V5G03_02645) cysT 514855..515691 (-) 837 WP_050170994.1 sulfate ABC transporter permease subunit CysT -
  V5G03_RS02650 (V5G03_02650) - 515872..516204 (+) 333 WP_003687908.1 hypothetical protein -
  V5G03_RS02655 (V5G03_02655) - 516563..517072 (+) 510 WP_003687909.1 isoprenylcysteine carboxyl methyltransferase family protein -
  V5G03_RS02660 (V5G03_02660) - 517302..517883 (-) 582 WP_047923823.1 superoxide dismutase -
  V5G03_RS02665 (V5G03_02665) dnaB 518047..519453 (+) 1407 WP_050162865.1 replicative DNA helicase -
  V5G03_RS02670 (V5G03_02670) pilH 519761..520423 (+) 663 WP_106346848.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  V5G03_RS02675 (V5G03_02675) pilI 520455..521063 (+) 609 WP_106346847.1 type IV pilus modification protein PilV Machinery gene
  V5G03_RS02680 (V5G03_02680) pilJ 521060..522037 (+) 978 WP_106346846.1 PilW family protein Machinery gene
  V5G03_RS02685 (V5G03_02685) pilK 522016..522627 (+) 612 WP_106346845.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  V5G03_RS02690 (V5G03_02690) pilL 522629..523102 (+) 474 WP_172617250.1 PilX family type IV pilin Machinery gene
  V5G03_RS02695 (V5G03_02695) - 523172..523480 (-) 309 WP_010951048.1 AzlD family protein -
  V5G03_RS02700 (V5G03_02700) - 523477..524185 (-) 709 Protein_522 AzlC family ABC transporter permease -
  V5G03_RS02705 (V5G03_02705) dut 524351..524803 (+) 453 WP_047925987.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 24540.91 Da        Isoelectric Point: 9.1564

>NTDB_id=936937 V5G03_RS02670 WP_106346848.1 519761..520423(+) (pilH) [Neisseria gonorrhoeae strain WHO_G_2024]
MCTRKQQGFTLTELLIVMAIAAIMATIALPNMSGWIASRRIASHAEQVANLLRFSRGEAVRLNLPVYICPVQVKKDGASN
NRCDSSKKGWGMLAFGDKNDNKAYDGDATDVFLRSVVLNDTDDSRINYAFNHIAFDSSRRTADRVVWTFNQNGTFGYLPD
QNLKDNSKFVYSDGYIQIVLTDAKAVSVDEKKFRSAVVLIDSSGRVEVCRKNDTRAVCKH

Nucleotide


Download         Length: 663 bp        

>NTDB_id=936937 V5G03_RS02670 WP_106346848.1 519761..520423(+) (pilH) [Neisseria gonorrhoeae strain WHO_G_2024]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGCCATCGCAGCCATTATGGCGACGAT
AGCCCTCCCCAATATGAGTGGGTGGATTGCATCACGCCGCATTGCCAGTCACGCGGAGCAGGTTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTGCGTCCAAC
AATAGATGTGACTCCAGCAAGAAGGGGTGGGGAATGTTGGCTTTCGGCGACAAAAACGACAATAAGGCATATGACGGCGA
TGCGACGGATGTTTTCCTCCGCAGCGTGGTGTTGAATGATACCGACGACAGCCGGATTAATTATGCCTTCAACCATATCG
CTTTCGATTCGTCTCGGCGGACCGCCGACCGTGTTGTTTGGACTTTCAACCAAAACGGGACATTCGGCTATTTGCCCGAT
CAGAATCTCAAGGATAATTCCAAATTTGTTTATTCTGACGGTTATATCCAAATCGTGTTGACAGATGCGAAGGCGGTTTC
TGTCGATGAAAAAAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAAGTTTGTCGTAAAAACGATA
CGCGCGCCGTATGCAAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

93.182

100

0.932