Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   V5F94_RS10775 Genome accession   NZ_CP145074
Coordinates   2060290..2060781 (-) Length   163 a.a.
NCBI ID   WP_353425694.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain WHO_I_2024     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2055290..2065781
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V5F94_RS10755 (V5F94_10795) pilA 2056561..2057814 (+) 1254 WP_047919725.1 signal recognition particle-docking protein FtsY Machinery gene
  V5F94_RS10760 (V5F94_10800) - 2057952..2058110 (+) 159 WP_154235844.1 hypothetical protein -
  V5F94_RS10765 (V5F94_10805) - 2058084..2058773 (-) 690 WP_353425693.1 opacity family porin -
  V5F94_RS10770 (V5F94_10810) - 2059402..2059919 (-) 518 Protein_2082 pilin -
  V5F94_RS10775 (V5F94_10815) pilE 2060290..2060781 (-) 492 WP_353425694.1 pilin Machinery gene
  V5F94_RS10780 (V5F94_10820) lpxC 2060888..2061811 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  V5F94_RS10785 (V5F94_10825) - 2062386..2062742 (-) 357 Protein_2085 pilin -
  V5F94_RS10790 (V5F94_10830) pilE 2062681..2062998 (-) 318 WP_003697861.1 pilin Machinery gene
  V5F94_RS10795 (V5F94_10835) - 2063370..2063501 (-) 132 WP_012504086.1 hypothetical protein -
  V5F94_RS10800 (V5F94_10840) - 2063583..2064272 (-) 690 WP_003687013.1 SprT family zinc-dependent metalloprotease -
  V5F94_RS10805 (V5F94_10845) - 2064269..2065012 (-) 744 WP_003687014.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  V5F94_RS10810 (V5F94_10850) gmhB 2065042..2065605 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -

Sequence

Protein


Download         Length: 163 a.a.        Molecular weight: 17248.10 Da        Isoelectric Point: 6.7070

>NTDB_id=936921 V5F94_RS10775 WP_353425694.1 2060290..2060781(-) (pilE) [Neisseria gonorrhoeae strain WHO_I_2024]
MPTDPDSRLRGNDEAILLAEGQKSAVTEYYLNNGKWPADNGAAGVASPATDIKGKYVKEVKVENGVVTAQMASTGVNNEI
KGKKLSLWAKRQAGSVKWFCGQPVTRNDAADNDDVTDDAGTDNGGKGKIDTKHLPSTCRDAASAVCTKHHAPISNAFQEN
GAF

Nucleotide


Download         Length: 492 bp        

>NTDB_id=936921 V5F94_RS10775 WP_353425694.1 2060290..2060781(-) (pilE) [Neisseria gonorrhoeae strain WHO_I_2024]
GTGCCGACAGACCCGGATTCCCGCCTGCGCGGGAATGACGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCGTTAC
CGAGTATTACCTGAATAACGGCAAATGGCCCGCCGACAACGGCGCTGCCGGCGTGGCATCCCCCGCCACCGACATCAAAG
GCAAATATGTTAAGGAAGTTAAAGTCGAAAACGGCGTCGTCACCGCCCAAATGGCTTCAACCGGCGTAAACAATGAAATC
AAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGCCGGTTCGGTAAAATGGTTCTGCGGACAGCCGGTTACGCGCAA
CGACGCCGCCGACAACGACGACGTTACCGACGACGCCGGCACCGACAACGGCGGCAAAGGCAAAATCGACACCAAGCACC
TGCCGTCAACCTGCCGCGACGCAGCATCTGCCGTTTGCACGAAACACCACGCGCCGATTTCAAATGCTTTCCAAGAAAAC
GGAGCTTTTTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(14-139)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

70.833

88.344

0.626
  pilE Neisseria gonorrhoeae strain FA1090

68.276

88.957

0.607